Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Forward (+)

8869845 .. 8871493

Gene Structure 1649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1109800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCATTTGGAGTAACCCCGAACATTCTCTGCGCAGAGGTCATCCCTACCAGCATCCACGGCCTGTGCATTGCCATCTGTGCCCTCACATTCTGGATTGGAGACATCATCATCACTTACGCATTTCCTGTCATGCTCTCCTCCGTTGGATTTGCTGGCATCTTCGGAATCTATGTTGTCGGGTCCATCGTTCCCGGATACTTGTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

71

Amino Acids

7.39

Weight (kDa)

4.35

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 61	2e-06	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	85
BccI	CCATC	2 cut(s)	83, 194
BceAI	ACGGC	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	63, 168
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	42, 54
BseMI	GCAATG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	85
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	42, 54
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 80
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	42, 54
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	183
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	1 cut(s)	63
CviKI_1	RGCY	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	183
FaeI	CATG	1 cut(s)	136
FaiI	YATR	2 cut(s)	134, 174
FatI	CATG	1 cut(s)	132
FokI	GGATG	2 cut(s)	29, 41
FspI	TGCGCA	1 cut(s)	34
GlaI	GCGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 80
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	64, 77, 79, 141, 141, 208
LweI	GCATC	2 cut(s)	63, 168
MaeIII	GTNAC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	3 cut(s)	31, 95, 151
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	60, 80
NciI	CCSGG	1 cut(s)	195
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	184
NsbI	TGCGCA	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	63, 168
SinI	GGWCC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.