Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Forward (+)

38015601 .. 38016686

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG174500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTTCATCCATCAGAAACAGCTTCGAAAGGACCAATATGGGCTGCTCTGCTTGAACCAGGGGTTAAGCACGCATTGTTTGTTGGAATTGGAATCCAGATTCTTCAGCAGTTTTCTGGGATAAATGGAGTTCTCTATTACACTCCTCAAATTCTTGAAGAGGCTGGAGTCTCAGTTCTTCTTGAAAGCTTTGGTCTCAGTACAACATCTGCATCTTTCCTCATCAGTGCATTCACAACTTTGTTGATGCTTCCTTGTATAGGTCTAGCCATGAAGCTCATGGATATCACTGGTAGAAGGATCCTGCTACTGACTACACTTCCTGTATTGATTGTGTCACTCATTCTTCTAGTCATTGCCAACTTAGTGACCCTAAGTTCAGTCATTGAAGCCGCAATATCAACCACTTGTGTGATAATCTATTTGTGTCTTTGTCACGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

147

Amino Acids

15.61

Weight (kDa)

5.81

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	14 - 144	2.8e-13	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	2 cut(s)	295, 308
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	4 cut(s)	56, 158, 185, 389
AjnI	CCWGG	1 cut(s)	58
AleI	CACNNNNGTG	1 cut(s)	410
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	3 cut(s)	23, 189, 277
AluI	AGCT	3 cut(s)	23, 189, 277
Alw26I	GTCTC	2 cut(s)	175, 200
AlwI	GGATC	2 cut(s)	295, 308
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	32
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	175, 200
BfaI	CTAG	3 cut(s)	266, 350, 442
BisI	GCNGC	2 cut(s)	45, 393
BlsI	GCNGC	2 cut(s)	46, 394
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	221, 237
BpmI	CTGGAG	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	7
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	186, 211
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	175, 200
BsmI	GAATGC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	300
BspACI	CCGC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	185, 210
BspLI	GGNNCC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	295, 308
BspT104I	TTCGAA	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	153
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	172, 197, 364, 374
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	7
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	2 cut(s)	175, 200
BstMBI	GATC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	7
BtsIMutI	CAGTG	2 cut(s)	232, 288
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	2 cut(s)	271, 280
CviJI	RGCY	8 cut(s)	23, 44, 164, 189, 269, 277, 392, 441
CviKI_1	RGCY	8 cut(s)	23, 44, 164, 189, 269, 277, 392, 441
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	4 cut(s)	172, 197, 364, 374
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	286
FaeI	CATG	2 cut(s)	274, 283
FaiI	YATR	4 cut(s)	40, 260, 272, 281
FatI	CATG	2 cut(s)	270, 279
Fnu4HI	GCNGC	2 cut(s)	45, 393
Fsp4HI	GCNGC	2 cut(s)	45, 393
FspBI	CTAG	3 cut(s)	266, 350, 442
GluI	GCNGC	2 cut(s)	45, 393
GsuI	CTGGAG	1 cut(s)	186
Hin1II	CATG	2 cut(s)	274, 283
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	3 cut(s)	93, 100, 168
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	97, 155, 182
HpyAV	CCTTC	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	212, 230
HpyF3I	CTNAG	4 cut(s)	172, 197, 364, 374
Hsp92II	CATG	2 cut(s)	274, 283
Kzo9I	GATC	1 cut(s)	300
LpnPI	CCDG	8 cut(s)	45, 72, 102, 110, 150, 276, 317, 336
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	221, 237
MaeI	CTAG	3 cut(s)	266, 350, 442
MaeIII	GTNAC	3 cut(s)	336, 367, 434
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	4 cut(s)	95, 170, 170, 338
MflI	RGATCY	1 cut(s)	300
MluCI	AATT	2 cut(s)	87, 150
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	3 cut(s)	154, 156, 230
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	2 cut(s)	274, 283
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	3 cut(s)	336, 367, 434
NspV	TTCGAA	1 cut(s)	26
OliI	CACNNNNGTG	1 cut(s)	410
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	93, 100
PkrI	GCNGC	2 cut(s)	46, 394
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	45, 393
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	4 cut(s)	25, 191, 265, 279
SfaNI	GCATC	2 cut(s)	221, 237
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	2 cut(s)	87, 150
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	3 cut(s)	266, 350, 442
StyD4I	CCNGG	1 cut(s)	58
TaqI	TCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	87, 150
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	93, 100
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	232, 295
TseFI	GTSAC	3 cut(s)	336, 367, 434
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	3 cut(s)	336, 367, 434
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	232, 295
VpaK11BI	GGWCC	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	150
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	3 cut(s)	266, 350, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.