Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Reverse (-)

34394898 .. 34395275

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACCCTAAGTTCAGTCGTTGAAGCCGCAATATCAACCACTTGTGTGATAATCTTTTTCTGTGTCTTTGTCACGGCCTATGGGCCAATCCCAAATATCCTCTGCTTCGAGATCTTTCCTACAAAGGTGCGTGGCGTCTGCATTGCCATCTGTGCCCTGGCGTACTGGATTCCAGACATTATCGTGACCTACACGCTGCCAGTTCTGCTTGATTCAATAGGCCTAGCTGGTATCTTTGGGATTTATGCCGTTGTTTGTGTCATGTCTTTGGTGTTTATCTACTTGAAAGTTCCAGAAACCAAAGGCATGCCCCTTGAAGTCATTACTAAATTCTTTTATGTTGGTGCAAGACAAATTGCTGCTGCCAAAAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

125

Amino Acids

13.62

Weight (kDa)

6.18

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	9 - 111	6.9e-22	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	164
AgsI	TTSAA	4 cut(s)	23, 216, 286, 317
AjnI	CCWGG	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AoxI	GGCC	3 cut(s)	75, 83, 220
ApeKI	GCWGC	3 cut(s)	196, 359, 362
ApoI	RAATTY	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	183, 346, 349
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	90, 233
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	224
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	4 cut(s)	27, 197, 360, 363
BlsI	GCNGC	4 cut(s)	28, 198, 361, 364
Bme1390I	CCNGG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	156
Bse1I	ACTGG	2 cut(s)	170, 200
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	170, 200
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	183, 346, 349
BshFI	GGCC	3 cut(s)	77, 85, 222
BsnI	GGCC	3 cut(s)	77, 85, 222
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	3 cut(s)	77, 85, 222
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	170, 200
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 205
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	183, 346, 349
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	77, 85, 222
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	262, 307
CviJI	RGCY	5 cut(s)	26, 77, 85, 222, 227
CviKI_1	RGCY	5 cut(s)	26, 77, 85, 222, 227
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	265, 310
FaiI	YATR	5 cut(s)	81, 246, 263, 308, 339
FatI	CATG	2 cut(s)	261, 306
Fnu4HI	GCNGC	4 cut(s)	27, 197, 360, 363
Fsp4HI	GCNGC	4 cut(s)	27, 197, 360, 363
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	4 cut(s)	27, 197, 360, 363
HaeIII	GGCC	3 cut(s)	77, 85, 222
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	265, 310
HinfI	GANTC	2 cut(s)	169, 212
Hpy188III	TCNNGA	4 cut(s)	109, 173, 184, 293
HpyCH4V	TGCA	2 cut(s)	141, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 205
HpyF3I	CTNAG	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	265, 310
Kzo9I	GATC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	143, 151, 170, 186, 213, 213, 306
Lsp1109I	GCAGC	3 cut(s)	183, 346, 349
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	70, 184
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	2 cut(s)	329, 354
MnlI	CCTC	1 cut(s)	110
MslI	CAYNNNNRTG	2 cut(s)	44, 182
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	152, 205
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	265, 310
NmuCI	GTSAC	2 cut(s)	70, 184
NspI	RCATGY	1 cut(s)	310
OliI	CACNNNNGTG	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	169, 212
PkrI	GCNGC	4 cut(s)	28, 198, 361, 364
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	2 cut(s)	44, 182
SatI	GCNGC	4 cut(s)	27, 197, 360, 363
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	3 cut(s)	129, 191, 229
SmiMI	CAYNNNNRTG	2 cut(s)	44, 182
SphI	GCATGC	1 cut(s)	310
Sse9I	AATT	2 cut(s)	329, 354
SseBI	AGGCCT	1 cut(s)	222
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	156
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	329, 354
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	169, 212
TseFI	GTSAC	2 cut(s)	70, 184
TseI	GCWGC	3 cut(s)	196, 359, 362
Tsp45I	GTSAC	2 cut(s)	70, 184
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.