Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8305667.1

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 532

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8305667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 445 bp

gaccttactgctcaccacaatccccatcttgatactctctctcgtgatcctagtccttggaagccttgtgaatttcggtagcgttgtgaatgcagcaatctcaactggtagcgttgtgctctacttctgttcctttgtgatggggttcggaccagtccccaacattctctgtgcggaaatcttccctacccgagtacgaggtctctgcattgccatctgtgccctcacattttggattggcgacatcatcgtcacctactccctcccggtgctgctcaaatccgtcggccttactggcgtttttggcatgtacgctgtagtgtgcatcattgcttggttttttgttttcatgaaagttccggaaaccaaaggcatgccccttgaagttatcaccgagttcttctctgttggtgcaaagcaggctgcagctgccaaggacaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

147

Amino Acids

15.7

Weight (kDa)

7.5

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	359
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	2 cut(s)	196, 312
AgsI	TTSAA	1 cut(s)	384
AluBI	AGCT	1 cut(s)	429
AluI	AGCT	1 cut(s)	429
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	359
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	5 cut(s)	93, 272, 423, 426, 429
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	3 cut(s)	5, 245, 383
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	5 cut(s)	105, 259, 410, 416, 438
BccI	CCATC	3 cut(s)	33, 134, 222
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	316, 424
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	5 cut(s)	94, 273, 424, 427, 430
BlsI	GCNGC	5 cut(s)	95, 274, 425, 428, 431
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BpuMI	CCSGG	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	56, 433
BsaWI	WCCGGW	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	110, 153, 299
Bse3DI	GCAATG	2 cut(s)	208, 328
BseAI	TCCGGA	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	56, 433
BseMI	GCAATG	2 cut(s)	208, 328
BseNI	ACTGG	3 cut(s)	110, 153, 299
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	5 cut(s)	105, 259, 410, 416, 438
BshFI	GGCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	267, 360
BslFI	GGGAC	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	121, 224
Bsp13I	TCCGGA	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	289
BspEI	TCCGGA	1 cut(s)	359
BspHI	TCATGA	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	208, 328
BsrI	ACTGG	3 cut(s)	110, 153, 299
BssECI	CCNNGG	2 cut(s)	56, 433
BssMI	GATC	1 cut(s)	46
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	56, 433
Bst2BI	CACGAG	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	375, 421
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 295, 304, 420, 429
BstNSI	RCATGY	2 cut(s)	311, 377
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	2 cut(s)	316, 424
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	5 cut(s)	105, 259, 410, 416, 438
BsuRI	GGCC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	375, 421
CciI	TCATGA	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	195, 311
CviAII	CATG	3 cut(s)	308, 350, 374
CviJI	RGCY	4 cut(s)	64, 289, 423, 429
CviKI_1	RGCY	4 cut(s)	64, 289, 423, 429
CviQI	GTAC	2 cut(s)	195, 311
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DrdI	GACNNNNNNGTC	1 cut(s)	249
DseDI	GACNNNNNNGTC	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	56, 433
Eco31I	GGTCTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	56, 433
ErhI	CCWWGG	2 cut(s)	56, 433
FaeI	CATG	3 cut(s)	311, 353, 377
FaiI	YATR	3 cut(s)	309, 351, 375
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	307, 349, 373
Fnu4HI	GCNGC	5 cut(s)	94, 273, 424, 427, 430
Fsp4HI	GCNGC	5 cut(s)	94, 273, 424, 427, 430
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	5 cut(s)	94, 273, 424, 427, 430
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	267, 360
Hin1II	CATG	3 cut(s)	311, 353, 377
HpaII	CCGG	2 cut(s)	267, 360
HphI	GGTGA	3 cut(s)	5, 245, 383
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	4 cut(s)	29, 44, 350, 360
Hpy99I	CGWCG	1 cut(s)	288
HpyCH4V	TGCA	5 cut(s)	93, 208, 325, 414, 426
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 295, 304, 420, 429
Hsp92II	CATG	3 cut(s)	311, 353, 377
Kpn2I	TCCGGA	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	6 cut(s)	91, 166, 280, 280, 373, 405
Lsp1109I	GCAGC	5 cut(s)	105, 259, 410, 416, 438
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	173, 392
MhlI	GDGCHC	2 cut(s)	121, 224
MluCI	AATT	2 cut(s)	71, 440
MnlI	CCTC	3 cut(s)	192, 234, 273
MroI	TCCGGA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	429
MspI	CCGG	2 cut(s)	267, 360
MspR9I	CCNGG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	95
MwoI	GCNNNNNNNGC	5 cut(s)	219, 295, 304, 420, 429
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	311, 353, 377
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	2 cut(s)	311, 377
PaeI	GCATGC	1 cut(s)	377
PagI	TCATGA	1 cut(s)	349
PctI	GAATGC	1 cut(s)	95
PkrI	GCNGC	5 cut(s)	95, 274, 425, 428, 431
PspPI	GGNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	429
RsaI	GTAC	2 cut(s)	196, 312
RsaNI	GTAC	2 cut(s)	195, 311
SatI	GCNGC	5 cut(s)	94, 273, 424, 427, 430
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	2 cut(s)	121, 224
SetI	ASST	4 cut(s)	6, 203, 258, 431
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	316, 424
SinI	GGWCC	1 cut(s)	150
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	2 cut(s)	71, 440
SsiI	CCGC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	2 cut(s)	56, 433
TasI	AATT	2 cut(s)	71, 440
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	5 cut(s)	93, 272, 423, 426, 429
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	338, 366
TspGWI	ACGGA	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	2 cut(s)	311, 377
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.