Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Reverse (-)

92090992 .. 92105710

Gene Structure 14719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAGACCCTCCACCACTCACCATATACCAAAGCTTCTCTAACACTAGTTGCACGACTCTGTAATAACGTTGGGCGGAAGCAAATCTGGACCCAAGTGGGTTTCTCCATAGATGCTATTCAAGATATCGGCATTGACTCGATTTCGGACTCAAACCGGTTTCCTTGCCGGCGGCTACCTACGGCGGAGATAGGTTGCAAGGCGGCCGGGAGTGCGCGCAAGGTTGAGGCGATGCTACCCCTTGAGTTTCACGTCCGGGTGGCTGGAGGAGGAAGAAACGGCTTGGAGAACATTTTCGGGCGATTTCGTGGGGAGCCCGTTGACTGGTATCAAATCATAAATCCACGTACTAGGGACCGACGTACTATTCCCAAAGTACGGGTAAGCCGCAGCATACCAAGGACACAACCAAGGCATGTATACTCAAAAGATCTTCCTACTTGCGTCCGTGGCCTCTACATTGCCATTTGTGCTCTCACTTATTGGATTGGAGACATCATCATCACTTACTCATTCCCTATCATGCTCTCCTCCATTGGTTTTGCTGGTGTCTTTGGAATCTACGTTGTCGGATGCATCATCTCCTGGATATTTGTTTACTTGAAAGTGCCCGAAACCAAGGGCATGCCTCTAGAAGTGATTTACGAGTTCTTTGCTGCTGGAGTAAAACCAAGCTTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

227

Amino Acids

25.53

Weight (kDa)

9.83

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	146 - 216	7.9e-13	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	1 cut(s)	217
AciI	CCGC	5 cut(s)	76, 172, 185, 203, 388
AclI	AACGTT	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	204
AfaI	GTAC	3 cut(s)	349, 364, 378
AfiI	CCNNNNNNNGG	2 cut(s)	324, 378
AgeI	ACCGGT	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	122, 604
AhlI	ACTAGT	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	584
AluBI	AGCT	2 cut(s)	35, 675
AluI	AGCT	2 cut(s)	35, 675
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	486
AoxI	GGCC	2 cut(s)	204, 451
ApeKI	GCWGC	2 cut(s)	390, 656
AsiGI	ACCGGT	1 cut(s)	156
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	2 cut(s)	217, 219
AspS9I	GGNCC	2 cut(s)	90, 355
AsuC2I	CCSGG	2 cut(s)	208, 257
AsuHPI	GGTGA	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	90, 355
BaeGI	GKGCMC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	402, 643
BceAI	ACGGC	2 cut(s)	198, 295
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	1 cut(s)	586
BcnI	CCSGG	2 cut(s)	208, 257
BcoDI	GTCTC	1 cut(s)	486
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	3 cut(s)	47, 351, 632
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	5 cut(s)	173, 204, 388, 391, 657
BlsI	GCNGC	5 cut(s)	174, 205, 389, 392, 658
Bme1390I	CCNGG	3 cut(s)	208, 257, 586
Bme18I	GGWCC	2 cut(s)	90, 355
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	90, 355
BmiI	GGNNCC	3 cut(s)	92, 315, 356
BmrFI	CCNGG	3 cut(s)	208, 257, 586
BmsI	GCATC	4 cut(s)	103, 222, 563, 585
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	2 cut(s)	285, 681
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	2 cut(s)	208, 257
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	398, 410, 448, 618
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 378
Bse118I	RCCGGY	2 cut(s)	156, 168
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	586
BseDI	CCNNGG	4 cut(s)	398, 410, 448, 618
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	2 cut(s)	324, 378
BseMI	GCAATG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	329
BsePI	GCGCGC	1 cut(s)	215
BseRI	GAGGAG	2 cut(s)	282, 520
BseSI	GKGCMC	1 cut(s)	612
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	402, 643
Bsh1236I	CGCG	1 cut(s)	217
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	206, 453
BshTI	ACCGGT	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	4 cut(s)	157, 169, 207, 256
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	324, 378
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	206, 453
Bsp1286I	GDGCHC	3 cut(s)	318, 475, 612
Bsp143I	GATC	1 cut(s)	430
BspACI	CCGC	5 cut(s)	76, 172, 185, 203, 388
BspANI	GGCC	2 cut(s)	206, 453
BspFNI	CGCG	1 cut(s)	217
BspLI	GGNNCC	3 cut(s)	92, 315, 356
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	2 cut(s)	156, 168
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	2 cut(s)	156, 168
BssECI	CCNNGG	4 cut(s)	398, 410, 448, 618
BssHII	GCGCGC	1 cut(s)	215
BssMI	GATC	1 cut(s)	430
BssNAI	GTATAC	1 cut(s)	421
BssT1I	CCWWGG	3 cut(s)	398, 410, 618
Bst1107I	GTATAC	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	586
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	170, 217, 626
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	217, 219
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	1 cut(s)	430
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 450, 470
BstNI	CCWGG	1 cut(s)	586
BstNSI	RCATGY	2 cut(s)	419, 628
BstSCI	CCNGG	3 cut(s)	206, 255, 584
BstSLI	GKGCMC	1 cut(s)	612
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	402, 643
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BstZ17I	GTATAC	1 cut(s)	421
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	206, 453
BtgI	CCRYGG	1 cut(s)	448
BtgZI	GCGATG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	578
Cac8I	GCNNGC	3 cut(s)	170, 217, 626
CfoI	GCGC	2 cut(s)	217, 219
Cfr10I	RCCGGY	2 cut(s)	156, 168
Cfr13I	GGNCC	2 cut(s)	90, 355
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	348, 363, 377
CspAI	ACCGGT	1 cut(s)	156
CviAII	CATG	3 cut(s)	416, 523, 625
CviJI	RGCY	9 cut(s)	35, 175, 206, 263, 282, 316, 387, 453, 675
CviKI_1	RGCY	9 cut(s)	35, 175, 206, 263, 282, 316, 387, 453, 675
CviQI	GTAC	3 cut(s)	348, 363, 377
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	204
EagI	CGGCCG	1 cut(s)	204
EciI	GGCGGA	2 cut(s)	91, 200
EclXI	CGGCCG	1 cut(s)	204
Eco130I	CCWWGG	3 cut(s)	398, 410, 618
Eco24I	GRGCYC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	90, 355
Eco52I	CGGCCG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	584
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	3 cut(s)	398, 410, 618
EcoT22I	ATGCAT	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	3 cut(s)	398, 410, 618
FaeI	CATG	3 cut(s)	419, 526, 628
FaiI	YATR	9 cut(s)	25, 27, 110, 338, 395, 417, 421, 524, 626
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	415, 522, 624
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	5 cut(s)	173, 204, 388, 391, 657
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	5 cut(s)	173, 204, 388, 391, 657
FspBI	CTAG	3 cut(s)	47, 351, 632
GlaI	GCGC	2 cut(s)	216, 218
GluI	GCNGC	5 cut(s)	173, 204, 388, 391, 657
GsuI	CTGGAG	2 cut(s)	285, 681
HaeIII	GGCC	2 cut(s)	206, 453
HapII	CCGG	4 cut(s)	157, 169, 207, 256
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	2 cut(s)	217, 219
Hin1II	CATG	3 cut(s)	419, 526, 628
Hin6I	GCGC	2 cut(s)	215, 217
HinP1I	GCGC	2 cut(s)	215, 217
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	2 cut(s)	33, 673
HinfI	GANTC	4 cut(s)	57, 137, 149, 558
HpaII	CCGG	4 cut(s)	157, 169, 207, 256
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	3 cut(s)	322, 421, 598
Hpy188I	TCNGA	2 cut(s)	148, 572
Hpy188III	TCNNGA	3 cut(s)	88, 122, 632
Hpy8I	GTNNAC	3 cut(s)	322, 421, 598
Hpy99I	CGWCG	1 cut(s)	363
HpyCH4IV	ACGT	5 cut(s)	69, 252, 346, 361, 564
HpyCH4V	TGCA	3 cut(s)	53, 198, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 450, 470
HpySE526I	ACGT	5 cut(s)	69, 252, 346, 361, 564
Hsp92II	CATG	3 cut(s)	419, 526, 628
HspAI	GCGC	2 cut(s)	215, 217
KroI	GCCGGC	1 cut(s)	168
KroNI	GCCGGC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	402, 643
LweI	GCATC	4 cut(s)	103, 222, 563, 585
MaeI	CTAG	3 cut(s)	47, 351, 632
MaeII	ACGT	5 cut(s)	69, 252, 346, 361, 564
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	3 cut(s)	16, 285, 425
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	3 cut(s)	318, 475, 612
MlyI	GAGTC	3 cut(s)	51, 131, 143
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	7 cut(s)	20, 220, 260, 263, 464, 541, 639
Mph1103I	ATGCAT	1 cut(s)	578
MroNI	GCCGGC	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	293
MspI	CCGG	4 cut(s)	157, 169, 207, 256
MspR9I	CCNGG	3 cut(s)	208, 257, 586
MvaI	CCWGG	1 cut(s)	586
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	3 cut(s)	212, 450, 470
NaeI	GCCGGC	1 cut(s)	170
NciI	CCSGG	2 cut(s)	208, 257
NdeII	GATC	1 cut(s)	430
NgoMIV	GCCGGC	1 cut(s)	168
NlaIII	CATG	3 cut(s)	419, 526, 628
NlaIV	GGNNCC	3 cut(s)	92, 315, 356
NsiI	ATGCAT	1 cut(s)	578
NspI	RCATGY	2 cut(s)	419, 628
PaeI	GCATGC	1 cut(s)	628
PauI	GCGCGC	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	558
PfoI	TCCNGGA	1 cut(s)	584
PinAI	ACCGGT	1 cut(s)	156
PkrI	GCNGC	5 cut(s)	174, 205, 389, 392, 658
PleI	GAGTC	3 cut(s)	51, 131, 143
PpsI	GAGTC	3 cut(s)	51, 131, 143
Ppu21I	YACGTR	1 cut(s)	347
Psp1406I	AACGTT	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	584
PspN4I	GGNNCC	3 cut(s)	92, 315, 356
PspPI	GGNCC	2 cut(s)	90, 355
PsuI	RGATCY	1 cut(s)	430
PteI	GCGCGC	1 cut(s)	215
RsaI	GTAC	3 cut(s)	349, 364, 378
RsaNI	GTAC	3 cut(s)	348, 363, 377
SatI	GCNGC	5 cut(s)	173, 204, 388, 391, 657
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	2 cut(s)	90, 355
SchI	GAGTC	3 cut(s)	51, 131, 143
ScrFI	CCNGG	3 cut(s)	208, 257, 586
SduI	GDGCHC	3 cut(s)	318, 475, 612
SfaNI	GCATC	4 cut(s)	103, 222, 563, 585
SinI	GGWCC	2 cut(s)	90, 355
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	46
SphI	GCATGC	1 cut(s)	628
SsiI	CCGC	5 cut(s)	76, 172, 185, 203, 388
SspMI	CTAG	3 cut(s)	47, 351, 632
StyD4I	CCNGG	3 cut(s)	206, 255, 584
StyI	CCWWGG	3 cut(s)	398, 410, 618
TaiI	ACGT	5 cut(s)	72, 255, 349, 364, 567
TaqI	TCGA	1 cut(s)	140
TaqII	GACCGA	1 cut(s)	372
TauI	GCSGC	3 cut(s)	175, 206, 390
TfiI	GAWTC	1 cut(s)	558
TseI	GCWGC	2 cut(s)	390, 656
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	90, 355
XbaI	TCTAGA	1 cut(s)	631
XceI	RCATGY	2 cut(s)	419, 628
XmiI	GTMKAC	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	3 cut(s)	47, 351, 632
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.