Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Forward (+)

9123190 .. 9125466

Gene Structure 2277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1112000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCATTTGGAGTAACCCCGAACATTCTCTGCTCAGAGATCATGCCTACGAGCATCCACGGCCTCTGCATTGCCATCTGTGCCCTCACATTCTGGATTGGAGACATCATCATCACTTACGCATTTCCTGTCATGCTCTCCTCCGTTGGATTTGCTGGCATCTTCGGAATCTATGTTGTCGGGTGCATCGTTCCTGGATATTTGTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

71

Amino Acids

7.45

Weight (kDa)

4.35

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 69	2.1e-07	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	85
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	3 cut(s)	63, 168, 195
BsaJI	CCNNGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	85
BshFI	GGCC	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 80
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	157
CviAII	CATG	2 cut(s)	43, 133
CviJI	RGCY	1 cut(s)	63
CviKI_1	RGCY	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	46, 136
FaiI	YATR	3 cut(s)	44, 134, 174
FatI	CATG	2 cut(s)	42, 132
FokI	GGATG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	46, 136
HinfI	GANTC	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	2 cut(s)	37, 167
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	69, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 80
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	46, 136
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	79, 141, 141, 180, 207
LweI	GCATC	3 cut(s)	63, 168, 195
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	3 cut(s)	74, 95, 151
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	60, 80
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	2 cut(s)	46, 136
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
Sau3AI	GATC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	3 cut(s)	63, 168, 195
StyD4I	CCNGG	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.