Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Reverse (-)

17993351 .. 17994662

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G185800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCAAATTCTTCAGTGCTATGGATTTTCTGGCATAAATGGGGTTCTATATTACACTCCTCAGATTCTTGAGCAAGCAGGGGTTGCAATTCTCTTATCAAATTTGGGCCTTAGCTCCACCTCTGCCTCTATTCTCGTAAGTGCTCTAACAACCTTGTTGATGATGCTTCCATCCATAGGCATTGCCATGAGACTATTGGATACCACTGGCAGAAGGTCACTGTTGTTGACGACGCTGCCTGTACTGACCGGGACTCTCCTAGAATTAAGTTTCGGACAACTTGTCCATATGGGTTCTGTTGTCAATGCAACAATTTCCACCATCAGTGTGGTGGTCTACTTCTGCTGCTTTGTCATGGGCTTTGGACCAATTCCTAACATTCTTTGCTCCGAGATCTTCCCCACTTGCGTTCGCGGCCTCTGCATCCCCATATGTGCCCTCACATTTTGGATTGGAGACGTCATTGTCACTTACACATTGCCTATCATACTCACCTCCATTGGTCTTGCACACCATTTCTTGGGTGTTTGTGTTCTTGAAGGTGCCGGAAACAAAGCGCATGCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

190

Amino Acids

20.02

Weight (kDa)

6.37

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AatII	GACGTC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	542
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	336
AccII	CGCG	1 cut(s)	414
AciI	CCGC	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	6, 100
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	176, 520
AgsI	TTSAA	1 cut(s)	539
AhdI	GACNNNNNGTC	1 cut(s)	281
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	2 cut(s)	184, 450
AoxI	GGCC	2 cut(s)	106, 415
ApeKI	GCWGC	2 cut(s)	235, 345
ApoI	RAATTY	2 cut(s)	6, 100
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	2 cut(s)	106, 365
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	2 cut(s)	222, 332
BccI	CCATC	2 cut(s)	178, 329
BciVI	GTATCC	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	184, 450
BfaI	CTAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	393
BisI	GCNGC	3 cut(s)	236, 346, 415
BlsI	GCNGC	3 cut(s)	237, 347, 416
Bme1390I	CCNGG	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	365
BmeRI	GACNNNNNGTC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	106, 365
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	2 cut(s)	153, 432
Bpu10I	CCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 520
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	180, 476
BseGI	GGATG	2 cut(s)	170, 423
BseLI	CCNNNNNNNGG	2 cut(s)	176, 520
BseMI	GCAATG	2 cut(s)	180, 476
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	222, 332
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	2 cut(s)	108, 417
BshNI	GGYRCC	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	249, 546
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	176, 520
BsmAI	GTCTC	2 cut(s)	184, 450
BsmBI	CGTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	108, 417
Bsp1286I	GDGCHC	2 cut(s)	145, 439
Bsp143I	GATC	1 cut(s)	393
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	2 cut(s)	108, 417
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	542
BsrDI	GCAATG	2 cut(s)	180, 476
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	393
BssNI	GRCGYC	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	75, 561
BstDEI	CTNAG	2 cut(s)	60, 110
BstF5I	GGATG	2 cut(s)	170, 423
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	2 cut(s)	184, 450
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 414, 420
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	248
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	222, 332
BstX2I	RGATCY	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	108, 417
BtsCI	GGATG	2 cut(s)	170, 423
BtsIMutI	CAGTG	4 cut(s)	20, 204, 218, 331
Cac8I	GCNNGC	2 cut(s)	75, 561
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	106, 365
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	3 cut(s)	187, 355, 560
CviJI	RGCY	4 cut(s)	108, 114, 360, 417
CviKI_1	RGCY	4 cut(s)	108, 114, 360, 417
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	2 cut(s)	60, 110
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
DrdI	GACNNNNNNGTC	1 cut(s)	464
DriI	GACNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eam1105I	GACNNNNNGTC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	365
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	3 cut(s)	190, 358, 563
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	3 cut(s)	186, 354, 559
FauNDI	CATATG	2 cut(s)	288, 431
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	236, 346, 415
FokI	GGATG	2 cut(s)	157, 410
Fsp4HI	GCNGC	3 cut(s)	236, 346, 415
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	3 cut(s)	236, 346, 415
HaeIII	GGCC	2 cut(s)	108, 417
HapII	CCGG	2 cut(s)	249, 546
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	190, 358, 563
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	2 cut(s)	64, 253
HpaII	CCGG	2 cut(s)	249, 546
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	2 cut(s)	228, 337
Hpy188I	TCNGA	3 cut(s)	63, 275, 391
Hpy188III	TCNNGA	2 cut(s)	68, 536
Hpy8I	GTNNAC	2 cut(s)	228, 337
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	2 cut(s)	207, 533
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	5 cut(s)	4, 86, 308, 423, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 414, 420
HpyF3I	CTNAG	2 cut(s)	60, 110
HpySE526I	ACGT	1 cut(s)	459
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	3 cut(s)	190, 358, 563
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	119, 392
LpnPI	CCDG	6 cut(s)	15, 63, 192, 252, 262, 559
Lsp1109I	GCAGC	2 cut(s)	222, 332
LweI	GCATC	2 cut(s)	153, 432
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	216, 466
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	1 cut(s)	388
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	2 cut(s)	145, 439
MluCI	AATT	6 cut(s)	6, 87, 100, 263, 312, 369
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	6 cut(s)	69, 130, 136, 428, 449, 505
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	2 cut(s)	185, 326
MspI	CCGG	2 cut(s)	249, 546
MspR9I	CCNGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	83, 414, 420
NciI	CCSGG	1 cut(s)	250
NdeI	CATATG	2 cut(s)	288, 431
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	3 cut(s)	190, 358, 563
NlaIV	GGNNCC	1 cut(s)	544
NmuCI	GTSAC	2 cut(s)	216, 466
NspI	RCATGY	1 cut(s)	563
PaeI	GCATGC	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	3 cut(s)	237, 347, 416
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	2 cut(s)	106, 365
PsuI	RGATCY	1 cut(s)	393
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	2 cut(s)	185, 326
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	3 cut(s)	236, 346, 415
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	2 cut(s)	106, 365
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	2 cut(s)	145, 439
SetI	ASST	7 cut(s)	116, 122, 155, 218, 462, 497, 544
SfaNI	GCATC	2 cut(s)	153, 432
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	2 cut(s)	185, 326
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	6 cut(s)	6, 87, 100, 263, 312, 369
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	1 cut(s)	462
TasI	AATT	6 cut(s)	6, 87, 100, 263, 312, 369
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	4 cut(s)	20, 211, 225, 331
TseFI	GTSAC	2 cut(s)	216, 466
TseI	GCWGC	2 cut(s)	235, 345
Tsp45I	GTSAC	2 cut(s)	216, 466
TspRI	CASTG	4 cut(s)	20, 211, 225, 331
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	2 cut(s)	6, 100
XceI	RCATGY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	3 cut(s)	193, 325, 328
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	1 cut(s)	260
ZraI	GACGTC	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.