Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Forward (+)

34362028 .. 34364853

Gene Structure 2826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGTTCATCCATCAGAAACAGCTTCGAAAGGACCAATATGGGCTGCTCTGCTTGAACCAGGGGTTAAGCACGCATTGTTTGTTGGAATTGGAATCCAGATTCTTCAGCAGTTTTCTGGGATAAATGGAGTTCTCTATTACACTCCTCAAATTCTTGAAGAGGCTGGAGTCTCAGTTCTTCTTGAAAGCTTTGGTCTCAGTACAACATCTGCATCTTTCCTCATCAGTGCATTCACAACTTTGTTGATGCTTCCTTGTATAGGTCTAGCCATGAAGCTCATGGATATCACTGGTAGAAGGATCCTGCTACTGACTACACTTCCTGTATTGATTGTGTCACTCATTCTTCTAGTCATTGCCAACTTAGTGACCCTAAGTTCAGTCATTGAAGCCGCAATATCAACCACTTGCCTAGTCACGGCCTATGGGCCAATCCCAAATATCCTCTGCTCCGAGATCTTTCCGACAAGGGTGCGTGGCCTCTGCATTGCCATCTGTGCCCTGGCGTACTGGATTTCAGACATTATCGTCACCTACACGCTGCCAGTTCTGCTTGATTCAATAGGCCTAGCTGGTATCTTTGGGATTTATGCTGTTGTTTGTGTCATCTCTTTGGTGTTTATCTACTTGAAAGTTCCAGAAACCAAAGGCATGCCCCTTGAAGTCATTACTGAATTCTTTTCTGTTGGTGCAAGACAAATTGCTGCCGCCAAAAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

240

Amino Acids

25.63

Weight (kDa)

5.39

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	14 - 227	7.4e-36	Sugar (and other) transporter
MFS_1	PF07690	59 - 216	5.9e-10	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AciI	CCGC	2 cut(s)	393, 708
AclWI	GGATC	2 cut(s)	295, 308
AcsI	RAATTY	2 cut(s)	150, 674
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	2 cut(s)	202, 509
AfiI	CCNNNNNNNGG	2 cut(s)	260, 418
AgsI	TTSAA	7 cut(s)	56, 158, 185, 389, 561, 631, 662
AjnI	CCWGG	2 cut(s)	58, 501
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	4 cut(s)	23, 189, 277, 572
AluI	AGCT	4 cut(s)	23, 189, 277, 572
Alw26I	GTCTC	2 cut(s)	175, 200
AlwI	GGATC	2 cut(s)	295, 308
AoxI	GGCC	4 cut(s)	420, 428, 478, 565
ApeKI	GCWGC	3 cut(s)	44, 541, 704
ApoI	RAATTY	2 cut(s)	150, 674
AspS9I	GGNCC	2 cut(s)	32, 428
AsuHPI	GGTGA	1 cut(s)	523
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	31, 528, 691
BccI	CCATC	2 cut(s)	19, 500
BceAI	ACGGC	1 cut(s)	435
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	2 cut(s)	60, 503
BcoDI	GTCTC	2 cut(s)	175, 200
BfaI	CTAG	4 cut(s)	266, 350, 413, 569
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	5 cut(s)	45, 393, 542, 705, 708
BlsI	GCNGC	5 cut(s)	46, 394, 543, 706, 709
Bme1390I	CCNGG	2 cut(s)	60, 503
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	32, 428
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	2 cut(s)	60, 503
BmsI	GCATC	2 cut(s)	221, 237
BpmI	CTGGAG	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	59, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 418
Bse1I	ACTGG	3 cut(s)	295, 515, 545
Bse3DI	GCAATG	2 cut(s)	354, 486
BseBI	CCWGG	2 cut(s)	60, 503
BseDI	CCNNGG	2 cut(s)	59, 501
BseGI	GGATG	1 cut(s)	7
BseLI	CCNNNNNNNGG	2 cut(s)	260, 418
BseMI	GCAATG	2 cut(s)	354, 486
BseMII	CTCAG	2 cut(s)	186, 211
BseNI	ACTGG	3 cut(s)	295, 515, 545
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	3 cut(s)	31, 528, 691
BshFI	GGCC	4 cut(s)	422, 430, 480, 567
BslI	CCNNNNNNNGG	2 cut(s)	260, 418
BsmAI	GTCTC	2 cut(s)	175, 200
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	422, 430, 480, 567
Bso31I	GGTCTC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	300, 456
BspACI	CCGC	2 cut(s)	393, 708
BspANI	GGCC	4 cut(s)	422, 430, 480, 567
BspCNI	CTCAG	2 cut(s)	185, 210
BspLI	GGNNCC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	295, 308
BspT104I	TTCGAA	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	354, 486
BsrI	ACTGG	3 cut(s)	295, 515, 545
BssECI	CCNNGG	2 cut(s)	59, 501
BssMI	GATC	2 cut(s)	300, 456
Bst2UI	CCWGG	2 cut(s)	60, 503
Bst6I	CTCTTC	1 cut(s)	153
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	72, 653
BstDEI	CTNAG	4 cut(s)	172, 197, 364, 374
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	7
BstKTI	GATC	2 cut(s)	303, 459
BstMAI	GTCTC	2 cut(s)	175, 200
BstMBI	GATC	2 cut(s)	300, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 550
BstNI	CCWGG	2 cut(s)	60, 503
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	2 cut(s)	58, 501
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	3 cut(s)	31, 528, 691
BstX2I	RGATCY	2 cut(s)	300, 456
BstYI	RGATCY	2 cut(s)	300, 456
BsuRI	GGCC	4 cut(s)	422, 430, 480, 567
BtsCI	GGATG	1 cut(s)	7
BtsIMutI	CAGTG	2 cut(s)	232, 288
Cac8I	GCNNGC	2 cut(s)	72, 653
Cfr13I	GGNCC	2 cut(s)	32, 428
Csp6I	GTAC	2 cut(s)	201, 508
CviAII	CATG	3 cut(s)	271, 280, 652
CviQI	GTAC	2 cut(s)	201, 508
DdeI	CTNAG	4 cut(s)	172, 197, 364, 374
DpnI	GATC	2 cut(s)	302, 458
DpnII	GATC	2 cut(s)	300, 456
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	674
EcoRII	CCWGG	2 cut(s)	58, 501
EcoRV	GATATC	1 cut(s)	286
FaeI	CATG	3 cut(s)	274, 283, 655
FaiI	YATR	7 cut(s)	40, 260, 272, 281, 426, 591, 653
FatI	CATG	3 cut(s)	270, 279, 651
Fnu4HI	GCNGC	5 cut(s)	45, 393, 542, 705, 708
Fsp4HI	GCNGC	5 cut(s)	45, 393, 542, 705, 708
FspBI	CTAG	4 cut(s)	266, 350, 413, 569
GluI	GCNGC	5 cut(s)	45, 393, 542, 705, 708
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	4 cut(s)	422, 430, 480, 567
Hin1II	CATG	3 cut(s)	274, 283, 655
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	4 cut(s)	93, 100, 168, 557
HphI	GGTGA	1 cut(s)	523
Hpy188I	TCNGA	4 cut(s)	16, 454, 465, 520
Hpy188III	TCNNGA	4 cut(s)	97, 155, 182, 638
HpyAV	CCTTC	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	212, 230, 486, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 550
HpyF3I	CTNAG	4 cut(s)	172, 197, 364, 374
Hsp92II	CATG	3 cut(s)	274, 283, 655
Kzo9I	GATC	2 cut(s)	300, 456
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	3 cut(s)	31, 528, 691
LweI	GCATC	2 cut(s)	221, 237
MaeI	CTAG	4 cut(s)	266, 350, 413, 569
MaeIII	GTNAC	4 cut(s)	336, 367, 415, 529
MalI	GATC	2 cut(s)	302, 458
MboI	GATC	2 cut(s)	300, 456
MboII	GAAGA	4 cut(s)	95, 170, 170, 338
MflI	RGATCY	2 cut(s)	300, 456
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	4 cut(s)	87, 150, 674, 699
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	2 cut(s)	64, 488
MnlI	CCTC	5 cut(s)	154, 156, 230, 455, 491
MseI	TTAA	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	60, 503
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	2 cut(s)	60, 503
MwoI	GCNNNNNNNGC	2 cut(s)	497, 550
NdeII	GATC	2 cut(s)	300, 456
NlaIII	CATG	3 cut(s)	274, 283, 655
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	4 cut(s)	336, 367, 415, 529
NspI	RCATGY	1 cut(s)	655
NspV	TTCGAA	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	655
PceI	AGGCCT	1 cut(s)	567
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	93, 100, 557
PkrI	GCNGC	5 cut(s)	46, 394, 543, 706, 709
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	58, 501
PspGI	CCWGG	2 cut(s)	58, 501
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	2 cut(s)	32, 428
PsuI	RGATCY	2 cut(s)	300, 456
RsaI	GTAC	2 cut(s)	202, 509
RsaNI	GTAC	2 cut(s)	201, 508
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	5 cut(s)	45, 393, 542, 705, 708
Sau3AI	GATC	2 cut(s)	300, 456
Sau96I	GGNCC	2 cut(s)	32, 428
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	60, 503
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	6 cut(s)	25, 191, 265, 279, 536, 574
SfaNI	GCATC	2 cut(s)	221, 237
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	32
SphI	GCATGC	1 cut(s)	655
Sse9I	AATT	4 cut(s)	87, 150, 674, 699
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	2 cut(s)	393, 708
SspMI	CTAG	4 cut(s)	266, 350, 413, 569
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	58, 501
TaqI	TCGA	1 cut(s)	26
TasI	AATT	4 cut(s)	87, 150, 674, 699
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	2 cut(s)	395, 710
TfiI	GAWTC	3 cut(s)	93, 100, 557
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	232, 295
TseFI	GTSAC	4 cut(s)	336, 367, 415, 529
TseI	GCWGC	3 cut(s)	44, 541, 704
Tsp45I	GTSAC	4 cut(s)	336, 367, 415, 529
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	232, 295
VpaK11BI	GGWCC	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	2 cut(s)	150, 674
XceI	RCATGY	1 cut(s)	655
XcmI	CCANNNNNNNNNTGG	2 cut(s)	277, 499
XspI	CTAG	4 cut(s)	266, 350, 413, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.