Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Reverse (-)

20752482 .. 20753114

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G016470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTTCCTTGCATAGCTACTTCCATGTGGCTTATGGATATAGCTGGCAGAAGGTCATTGCTGCTATCCACATTACCAATACTGATCGTGGCGCTTGCTTTACTAGTGTTTGGCAGCATTGTCAACTTAGGCACTATTTGGACTGCAACAAAATACACTGCTAGTGTAGTGGTCTACCTCTGCTGCTTTGTCATGGGCTTCGGGGTAATCCCAAACATTCTTTGTGCAGAGATCTTCCCTACTTGCGTCCGTGGCCTCTGCATTGCCATTTGTGCTCTCATTTATTGGATTGGAGACATCATCATCACTTACTCATTCCCTGTCATGCTCTCCTCCATTGGTTTTGCTGGTGTCTCTGGAATCTACGTTGTCGGATGCATCATCTCCTGGACATTTGTTTACTTGAAAGTGCCAGAAACCAAGGGCATGCCTCTAGAAGTGATTTCTGGGTTCTTTGCTGCTGGAGTAAAACCAGCTTCAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

162

Amino Acids

17.39

Weight (kDa)

7.47

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	7 - 149	1.1e-22	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	406
AhlI	ACTAGT	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	3 cut(s)	17, 44, 476
AluI	AGCT	3 cut(s)	17, 44, 476
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	288, 358
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	4 cut(s)	61, 114, 183, 458
AspLEI	GCGC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	4 cut(s)	48, 126, 170, 445
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	288, 358
BcuI	ACTAGT	1 cut(s)	103
BfaI	CTAG	3 cut(s)	104, 162, 434
BfoI	RGCGCY	1 cut(s)	95
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	4 cut(s)	62, 115, 184, 459
BlsI	GCNGC	4 cut(s)	63, 116, 185, 460
Bme1390I	CCNGG	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	2 cut(s)	365, 387
BpmI	CTGGAG	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	250, 420
Bse3DI	GCAATG	2 cut(s)	56, 261
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	250, 420
BseGI	GGATG	1 cut(s)	380
BseMI	GCAATG	2 cut(s)	56, 261
BseRI	GAGGAG	1 cut(s)	322
BseXI	GCAGC	4 cut(s)	48, 126, 170, 445
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	288, 358
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	84, 231
BspANI	GGCC	1 cut(s)	255
BsrDI	GCAATG	2 cut(s)	56, 261
BssECI	CCNNGG	2 cut(s)	250, 420
BssMI	GATC	2 cut(s)	84, 231
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	388
BstC8I	GCNNGC	3 cut(s)	46, 96, 428
BstDEI	CTNAG	1 cut(s)	127
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	380
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	87, 234
BstMAI	GTCTC	2 cut(s)	288, 358
BstMBI	GATC	2 cut(s)	84, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 272
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	386
BstV1I	GCAGC	4 cut(s)	48, 126, 170, 445
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	46, 96, 428
CfoI	GCGC	1 cut(s)	94
CseI	GACGC	1 cut(s)	235
CviAII	CATG	4 cut(s)	25, 193, 325, 427
CviJI	RGCY	6 cut(s)	17, 31, 44, 198, 255, 476
CviKI_1	RGCY	6 cut(s)	17, 31, 44, 198, 255, 476
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	86, 233
DpnII	GATC	2 cut(s)	84, 231
Eco130I	CCWWGG	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	4 cut(s)	28, 196, 328, 430
FaiI	YATR	7 cut(s)	14, 26, 35, 41, 194, 326, 428
FatI	CATG	4 cut(s)	24, 192, 324, 426
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	62, 115, 184, 459
FokI	GGATG	1 cut(s)	387
Fsp4HI	GCNGC	4 cut(s)	62, 115, 184, 459
FspBI	CTAG	3 cut(s)	104, 162, 434
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	4 cut(s)	62, 115, 184, 459
GsuI	CTGGAG	1 cut(s)	483
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	255
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	4 cut(s)	28, 196, 328, 430
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	360
Hpy166II	GTNNAC	3 cut(s)	124, 175, 400
Hpy188I	TCNGA	2 cut(s)	374, 481
Hpy188III	TCNNGA	2 cut(s)	357, 434
Hpy8I	GTNNAC	3 cut(s)	124, 175, 400
HpyAV	CCTTC	1 cut(s)	45
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	5 cut(s)	12, 146, 227, 261, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 272
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	4 cut(s)	28, 196, 328, 430
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	84, 231
LpnPI	CCDG	9 cut(s)	30, 333, 333, 342, 373, 400, 426, 432, 447
Lsp1109I	GCAGC	4 cut(s)	48, 126, 170, 445
LweI	GCATC	2 cut(s)	365, 387
MaeI	CTAG	3 cut(s)	104, 162, 434
MaeII	ACGT	1 cut(s)	366
MalI	GATC	2 cut(s)	86, 233
MboI	GATC	2 cut(s)	84, 231
MboII	GAAGA	1 cut(s)	226
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	4 cut(s)	188, 266, 343, 441
Mph1103I	ATGCAT	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	252, 272
NdeII	GATC	2 cut(s)	84, 231
NlaIII	CATG	4 cut(s)	28, 196, 328, 430
NsiI	ATGCAT	1 cut(s)	380
NspI	RCATGY	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	360
PfoI	TCCNGGA	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	63, 116, 185, 460
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	231
SatI	GCNGC	4 cut(s)	62, 115, 184, 459
Sau3AI	GATC	2 cut(s)	84, 231
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	6 cut(s)	19, 46, 56, 180, 369, 478
SfaNI	GCATC	2 cut(s)	365, 387
SpeI	ACTAGT	1 cut(s)	103
SphI	GCATGC	1 cut(s)	430
SspMI	CTAG	3 cut(s)	104, 162, 434
StyD4I	CCNGG	1 cut(s)	386
StyI	CCWWGG	1 cut(s)	420
TaiI	ACGT	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	360
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	4 cut(s)	61, 114, 183, 458
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	163
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	3 cut(s)	104, 162, 434
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.