Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Forward (+)

9173924 .. 9174816

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1112900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCAACAATCTCCACCGCCGTGCTTGCTGCTTTGTCATGGCATTTGGAGTAACCCCGAACATTCTCTGCGCATAGATCATCCCAACGAGCATCGGAGCATCCACGGCCTCTGCATTGCCATCTGTGCCCTCACATTCTGGATTGGAGACATCATCATCACTTACGCATTTCCTGTCATGCTCTCCTCCGTTGGATTTGCTGGCATCTTGGGAATCTATGTTGTCGGGTGCATCGTTCCTGGATATTTGTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

86

Amino Acids

9.34

Weight (kDa)

6.13

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	71
AciI	CCGC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	238
AleI	CACNNNNGTG	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	2 cut(s)	4, 121
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	4 cut(s)	100, 108, 213, 240
BsaJI	CCNNGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	79, 99
BseMI	GCAATG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	26, 202
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	79, 99
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 105, 125
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	79, 99
Cac8I	GCNNGC	2 cut(s)	26, 202
CfoI	GCGC	1 cut(s)	72
CviAII	CATG	2 cut(s)	38, 178
CviJI	RGCY	1 cut(s)	108
CviKI_1	RGCY	1 cut(s)	108
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	2 cut(s)	41, 181
FaiI	YATR	4 cut(s)	39, 74, 179, 219
FatI	CATG	2 cut(s)	37, 177
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	66, 86
Fsp4HI	GCNGC	1 cut(s)	29
FspI	TGCGCA	1 cut(s)	71
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	41, 181
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	4, 114, 231
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 105, 125
Hsp92II	CATG	2 cut(s)	41, 181
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	5 cut(s)	124, 186, 186, 225, 252
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	4 cut(s)	100, 108, 213, 240
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	119, 140, 196
MslI	CAYNNNNRTG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	25, 105, 125
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	41, 181
NsbI	TGCGCA	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	19
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	4 cut(s)	100, 108, 213, 240
SmiMI	CAYNNNNRTG	1 cut(s)	19
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	213
TseI	GCWGC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.