Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003454

Physical Location & Seq

Genomic Coordinates Reverse (-)

19940660 .. 19940956

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG180200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGCTTCGGGGTAATCCCAAACATTCTTTGTGCAGAGATCTTCCCTACTTGCGTCCGTGGCCTCTGCATTGCCATTTGTGCTCTCACTTATTGGATTGGAGACATCATCATCACTTACTCATTCCCTGTCATGCTCTCCTGCATTGGTTTTGCTGGTGTCTTTGGAATCTACGTTGTCGGATGCATCATCTCCTGGACATTTGTTTACTTGAAAGTGCCTGAAACCAAGGGCATGCCTCTAGAAGTGATTTCTGAGTTCTTTGCTGCTGGAGTAAAACCAGCTTCAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

98

Amino Acids

10.59

Weight (kDa)

4.66

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 88	1.2e-17	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003454)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10120 FvH4_2g16850 FvH4_5g25950
malus_domestica	MD02G1109600.v1.1 MD02G1109800.v1.1 MD02G1112000.v1.1 MD02G1112900.v1.1 MD15G1228400.v1.1
prunus_persica	Prupe.7G185700_v2.0.a1 Prupe.7G185800_v2.0.a1 Prupe.7G185800_v2.0.a1
pyrus_communis	pycom15g20350
rosa_chinensis	RchiOBHm_Chr2g0096891 RchiOBHm_Chr4g0410591 RchiOBHm_Chr5g0025901
rosa_laevigata	RLG00000008254 RLG00000016680
rosa_multiflora	Rmu_co8305667.1_g000001 Rmu_ssc0000215.1_g000005
rosa_roxburghii	Rroxscaffold_1G00071210 Rroxscaffold_2G00145180
rosa_rugosa	Rorug02G0061700 Rorug02G0061700
rosa_samantha	Rh2AG109600 Rh2BG111500 Rh2CG113600 Rh2DG112700 Rh4CG174500 Rh5CG197800 Rh5DG180200 Rh6BG252000 Rh7AG299900 Rh7CG318500 Rh7DG300100
rosa_wichuraiana	Rw2G008460 Rw5G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	242
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	2 cut(s)	173, 195
BpmI	CTGGAG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	58, 228
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	58, 228
BseGI	GGATG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	58, 228
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	188
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 80
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	236
CseI	GACGC	1 cut(s)	43
CviAII	CATG	2 cut(s)	133, 235
CviJI	RGCY	3 cut(s)	6, 63, 284
CviKI_1	RGCY	3 cut(s)	6, 63, 284
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	136, 238
FaiI	YATR	2 cut(s)	134, 236
FatI	CATG	2 cut(s)	132, 234
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	63
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	136, 238
HinfI	GANTC	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	182, 256, 289
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	35, 69, 144, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 80
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	136, 238
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	7 cut(s)	141, 141, 154, 181, 208, 234, 255
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	173, 195
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	174
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	34
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	2 cut(s)	74, 249
Mph1103I	ATGCAT	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	60, 80
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	2 cut(s)	136, 238
NsiI	ATGCAT	1 cut(s)	188
NspI	RCATGY	1 cut(s)	238
PaeI	GCATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	39
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	2 cut(s)	177, 286
SfaNI	GCATC	2 cut(s)	173, 195
SphI	GCATGC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	228
TaiI	ACGT	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	168
TseI	GCWGC	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.