RLG00000008254
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003454
Physical Location & Seq
Forward (+)
27829144 .. 27829671
528 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008254

Sequence Viewer

Length: 381 bp
ATGGATATAGCTGGCAGAAGGTCATTGCTGCTATCCACATTACCAATACTGATAGTGGTGCTTGCTTTACTAGTGTCTGGCAGTATTGTCAACTTAGGCACTATTTGGACTGCAACAATATCCACTGCTAGTGTAGTGGTCTACCTCTGCTGCTTCGTCATGGGCTTCGGGGTAATCCCAAACATTCTTTGTGCAGAGATCTTCCCTACTCGCGTCCGTGGCCGCTGCATTGCCATTTGTGCTCTCACTTATTGGATTGGAGACATCATCAATTCATCATCACTTACTCATTCCCTTTCATGCTCTCCTTCATTGGTTTTGCTGGTGTCTTTGGAATCTACGTTGTCGGATGCATCATCTCCTGGATATTTGTTTACTTGA

Protein Analysis

127

Amino Acids

13.34

Weight (kDa)

6.5

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 1 - 92 3.6e-13 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 213
AciI CCGC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 220
AhlI ACTAGT 1 cut(s) 70
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 255
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 3 cut(s) 28, 150, 225
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 3 cut(s) 15, 137, 212
BciT130I CCWGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 255
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 2 cut(s) 71, 129
BglII AGATCT 1 cut(s) 198
BisI GCNGC 4 cut(s) 29, 151, 223, 226
BlsI GCNGC 4 cut(s) 30, 152, 224, 227
Bme1390I CCNGG 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 2 cut(s) 340, 362
BsaJI CCNNGG 1 cut(s) 217
Bse3DI GCAATG 2 cut(s) 23, 228
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 355
BseMI GCAATG 2 cut(s) 23, 228
BseXI GCAGC 3 cut(s) 15, 137, 212
BsgI GTGCAG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 1 cut(s) 223
BspANI GGCC 1 cut(s) 222
BspFNI CGCG 1 cut(s) 213
BsrDI GCAATG 2 cut(s) 23, 228
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 13, 63
BstDEI CTNAG 1 cut(s) 94
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 219, 239
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 15, 137, 212
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 13, 63
CseI GACGC 1 cut(s) 202
CviAII CATG 2 cut(s) 160, 300
CviJI RGCY 3 cut(s) 11, 165, 222
CviKI_1 RGCY 3 cut(s) 11, 165, 222
DdeI CTNAG 1 cut(s) 94
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 355
FaeI CATG 2 cut(s) 163, 303
FaiI YATR 3 cut(s) 8, 161, 301
FatI CATG 2 cut(s) 159, 299
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 4 cut(s) 29, 151, 223, 226
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 4 cut(s) 29, 151, 223, 226
FspBI CTAG 2 cut(s) 71, 129
GluI GCNGC 4 cut(s) 29, 151, 223, 226
HaeIII GGCC 1 cut(s) 222
HgaI GACGC 1 cut(s) 202
Hin1II CATG 2 cut(s) 163, 303
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 335
Hpy166II GTNNAC 3 cut(s) 91, 142, 375
Hpy188I TCNGA 1 cut(s) 349
Hpy8I GTNNAC 3 cut(s) 91, 142, 375
HpyAV CCTTC 2 cut(s) 12, 318
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 113, 194, 228, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 239
HpyF3I CTNAG 1 cut(s) 94
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 2 cut(s) 163, 303
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 4 cut(s) 63, 308, 348, 375
Lsp1109I GCAGC 3 cut(s) 15, 137, 212
LweI GCATC 2 cut(s) 340, 362
MaeI CTAG 2 cut(s) 71, 129
MaeII ACGT 1 cut(s) 341
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 1 cut(s) 193
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 1 cut(s) 155
Mph1103I ATGCAT 1 cut(s) 355
MspA1I CMGCKG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 219, 239
NdeII GATC 1 cut(s) 198
NlaIII CATG 2 cut(s) 163, 303
NsiI ATGCAT 1 cut(s) 355
PfeI GAWTC 1 cut(s) 335
PfoI TCCNGGA 1 cut(s) 361
PkrI GCNGC 4 cut(s) 30, 152, 224, 227
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 198
SatI GCNGC 4 cut(s) 29, 151, 223, 226
Sau3AI GATC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 244
SetI ASST 4 cut(s) 13, 23, 147, 344
SfaNI GCATC 2 cut(s) 340, 362
SpeI ACTAGT 1 cut(s) 70
Sse9I AATT 1 cut(s) 271
SsiI CCGC 1 cut(s) 223
SspMI CTAG 2 cut(s) 71, 129
StyD4I CCNGG 1 cut(s) 361
TaiI ACGT 1 cut(s) 344
TasI AATT 1 cut(s) 271
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 1 cut(s) 130
TseI GCWGC 3 cut(s) 28, 150, 225
TspDTI ATGAA 3 cut(s) 264, 288, 300
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 2 cut(s) 71, 129
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.