Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010603

Physical Location & Seq

Genomic Coordinates Reverse (-)

18995330 .. 18995563

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1197000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGAAAGGGTGGGACACCCGACTTCTTTTTTGCACCACGGGTATATTATTGAAGAGATTACTTGTTGACAGAAAGTTGAGAGGTGTTACATATGTCGTTGTTGATGAGATTCATGAACGCGGAATGAATGAAGGTAATTTTCAATTTTGGAAAGTAAATTTGTTGATTGGTATTTCTAATGTGGTGTTAAGTAAAGCCTTGCATTTGTTTCAGATTTTCTTCTTATTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001047 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042221 GO:0042623 GO:0042826 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043330 GO:0043331 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind dsrm

Protein Analysis

78

Amino Acids

9.03

Weight (kDa)

9.74

Isoelectric Point (pI)

7.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010603)

Species	Orthologous Gene IDs
malus_domestica	MD02G1197000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0141241 RchiOBHm_Chr2g0145471 RchiOBHm_Chr7g0193751
rosa_laevigata	RLG00000000961 RLG00000008242 RLG00000008722 RLG00000023244 RLG00000032752
rosa_multiflora	Rmu_sc0008822.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041370
rosa_rugosa	Rorug05G0037800 Rorug05G0037900
rosa_samantha	Rh1AG207800 Rh1BG186000 Rh1DG215600 Rh2BG456500 Rh4BG096200 Rh5BG071900 Rh6AG004600
rosa_wichuraiana	Rw3G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	52, 143
ApoI	RAATTY	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
BsaJI	CCNNGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	112
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	1 cut(s)	197
CviKI_1	RGCY	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	116
FaiI	YATR	4 cut(s)	44, 91, 93, 114
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	91
Hin1II	CATG	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	213, 233
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	33, 202
Hsp92II	CATG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	85
MboII	GAAGA	2 cut(s)	64, 211
MluCI	AATT	3 cut(s)	136, 143, 157
MnlI	CCTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	188
MvnI	CGCG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	91
NlaIII	CATG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	188
SetI	ASST	2 cut(s)	85, 136
SgeI	CNNG	7 cut(s)	30, 49, 51, 74, 125, 131, 211
Sse9I	AATT	3 cut(s)	136, 143, 157
SsiI	CCGC	1 cut(s)	120
TasI	AATT	3 cut(s)	136, 143, 157
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TspDTI	ATGAA	5 cut(s)	17, 101, 129, 140, 144
XapI	RAATTY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.