Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010603

Physical Location & Seq

Genomic Coordinates Reverse (-)

39394988 .. 39406498

Gene Structure 11511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG207800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGACGGGGCGAGTGTGATGAAGACACTGGTCATGTGACTGGGCTTGATCTTAGCAGCAGTTGTCTCTACGGCTCCATCAACTCCAACAGCAGCCTAGCTCTTTCGCCTTTTTGCCGGCAACAAACCTCCTCCAACATAATCACCGACCTTCAGGGGAAACCCTCGTTTGCAGTCAATCGTTTCATTTCTCAGATGCCCAAGCCGTTGATTGCTGAGATTTATGTGATTTGGAATATCGATTGGAAGCGCAAGGAACAGATCGAGTGGAAGCGCTGTTATGGCAAGTACAAGCCCCTAAAGAAACCGAGGTCGGCGGAGGTTGAAGCCGAGCAAAAGGAGCTCCAGGAGGCTATCAAAAATGCAAGACAAAGGGGCTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

128

Amino Acids

14.57

Weight (kDa)

8.93

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010603)

Species	Orthologous Gene IDs
malus_domestica	MD02G1197000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0141241 RchiOBHm_Chr2g0145471 RchiOBHm_Chr7g0193751
rosa_laevigata	RLG00000000961 RLG00000008242 RLG00000008722 RLG00000023244 RLG00000032752
rosa_multiflora	Rmu_sc0008822.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041370
rosa_rugosa	Rorug05G0037800 Rorug05G0037900
rosa_samantha	Rh1AG207800 Rh1BG186000 Rh1DG215600 Rh2BG456500 Rh4BG096200 Rh5BG071900 Rh6AG004600
rosa_wichuraiana	Rw3G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	326, 382
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	2 cut(s)	101, 343
AluI	AGCT	2 cut(s)	101, 343
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	71
Aor51HI	AGCGCT	1 cut(s)	275
ApeKI	GCWGC	2 cut(s)	57, 93
AspLEI	GCGC	2 cut(s)	252, 276
AsuHPI	GGTGA	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	69, 105
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	2 cut(s)	88, 190
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	277
BisI	GCNGC	2 cut(s)	58, 94
BlsI	GCNGC	2 cut(s)	59, 95
Bme1390I	CCNGG	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	51
BoxI	GACNNNNGTC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	329
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	34, 46
BseBI	CCWGG	1 cut(s)	347
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	308
BseMII	CTCAG	2 cut(s)	206, 207
BseNI	ACTGG	2 cut(s)	34, 46
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	69, 105
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	49, 261
BspACI	CCGC	1 cut(s)	317
BspCNI	CTCAG	2 cut(s)	205, 208
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	34, 46
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	49, 261
Bst2UI	CCWGG	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	53, 192, 216
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	2 cut(s)	252, 276
BstKTI	GATC	2 cut(s)	52, 264
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	49, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 340
BstNI	CCWGG	1 cut(s)	347
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	69, 105
BstV2I	GAAGAC	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	2 cut(s)	252, 276
Cfr10I	RCCGGY	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	35
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	53, 192, 216
DpnI	GATC	2 cut(s)	51, 263
DpnII	GATC	2 cut(s)	49, 261
EciI	GGCGGA	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco47III	AGCGCT	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	1 cut(s)	38
FaiI	YATR	4 cut(s)	36, 140, 225, 282
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	58, 94
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	58, 94
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	2 cut(s)	251, 275
GluI	GCNGC	2 cut(s)	58, 94
GsuI	CTGGAG	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	277
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	2 cut(s)	252, 276
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	2 cut(s)	250, 274
HinP1I	GCGC	2 cut(s)	250, 274
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	173, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 340
HpyF3I	CTNAG	3 cut(s)	53, 192, 216
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	2 cut(s)	250, 274
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
Kzo9I	GATC	2 cut(s)	49, 261
LmnI	GCTCC	3 cut(s)	80, 340, 348
LpnPI	CCDG	6 cut(s)	15, 27, 131, 140, 332, 359
Lsp1109I	GCAGC	2 cut(s)	69, 105
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	51, 263
MboI	GATC	2 cut(s)	49, 261
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	1 cut(s)	382
MmeI	TCCRAC	2 cut(s)	111, 159
MnlI	CCTC	6 cut(s)	139, 142, 175, 303, 313, 343
MroNI	GCCGGC	1 cut(s)	117
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	282, 340
NaeI	GCCGGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	49, 261
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	59, 95
PshAI	GACNNNNGTC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	345
SatI	GCNGC	2 cut(s)	58, 94
Sau3AI	GATC	2 cut(s)	49, 261
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	6 cut(s)	103, 131, 153, 314, 324, 345
SfaNI	GCATC	1 cut(s)	186
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	317
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	345
TaqI	TCGA	2 cut(s)	240, 264
TasI	AATT	1 cut(s)	382
TatI	WGTACW	1 cut(s)	288
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	57, 93
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	36, 175
TspRI	CASTG	1 cut(s)	34
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.