RLG00000032752

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010603
Physical Location & Seq
Reverse (-)
18622347 .. 18624026
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032752

Sequence Viewer

Length: 579 bp
ATGCCCAAGCCGTTGATTGCTGAGATTTATGGTTTTTGCTCTGCTGGGTTTTGTTATCTGCTTCAATTTGTGTCAAAGAAAATGTCTTTTTTGTTGAAAAGCGATTCGGAATATCGATTGGAAGCGCAAGGAACAGATCGAGTGGAAGCGCTGTTATGGCAAGTACAAGCCCCTAAAGAAACCGAGGTCGGCGGAGTTACAGTCCAAGTTCACGGCTTGGATAAAACCCCAAGCTCTGCTACTTTAGAGCAAGAAGAAAAAGGGGCCGACTCGAACCATAATTATGTGCAATCTAATTATTGCTTTGATTGCCTTGTCCTTGGTAGCCACTTATGTCTATTGGTCCAGAAGGTCACTGGGTCTGACTTTTCTGCTACAGAGAAAATGGATGCGTTTTCAAAGAAGGATGATCTTTCTGGTTATGTTATGAGTCTGGGTAAATCAATGAAGACTACAATTGAGAAAGAACACAAGGTAGATAAGGCTGGGGATTTGGCCCTCTCTGCTTCACTAGAGGAACACACAGAGGCAAGTCAGGCAACTAGAGATGATAATGGTGATTCTGATGGTGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.02

Weight (kDa)

4.75

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AfaI GTAC 1 cut(s) 165
AfeI AGCGCT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 65, 97, 399
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 2 cut(s) 264, 495
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 2 cut(s) 127, 151
AspS9I GGNCC 3 cut(s) 264, 343, 496
AsuHPI GGTGA 1 cut(s) 569
AvaII GGWCC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 455
BccI CCATC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 229
BfaI CTAG 2 cut(s) 512, 543
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 264, 343, 496
BmiI GGNNCC 1 cut(s) 265
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 379
BmuI ACTGGG 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 455
Bsa29I ATCGAT 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 183, 319
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bse1I ACTGG 1 cut(s) 361
BseCI ATCGAT 1 cut(s) 115
BseDI CCNNGG 2 cut(s) 183, 319
BseGI GGATG 2 cut(s) 394, 412
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 361
BseYI CCCAGC 2 cut(s) 44, 485
BshFI GGCC 2 cut(s) 266, 497
BshVI ATCGAT 1 cut(s) 115
BsnI GGCC 2 cut(s) 266, 497
Bsp143I GATC 2 cut(s) 136, 409
BspACI CCGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 266, 497
BspCNI CTCAG 1 cut(s) 13
BspDI ATCGAT 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 265
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 183, 319
BssMI GATC 2 cut(s) 136, 409
BssT1I CCWWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 394, 412
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 2 cut(s) 127, 151
BstKTI GATC 2 cut(s) 139, 412
BstMBI GATC 2 cut(s) 136, 409
BstMWI GCNNNNNNNGC 4 cut(s) 157, 309, 503, 536
BstSFI CTRYAG 1 cut(s) 375
BstV2I GAAGAC 1 cut(s) 455
Bsu15I ATCGAT 1 cut(s) 115
BsuRI GGCC 2 cut(s) 266, 497
BsuTUI ATCGAT 1 cut(s) 115
BtsCI GGATG 2 cut(s) 394, 412
BtsIMutI CAGTG 1 cut(s) 354
CfoI GCGC 2 cut(s) 127, 151
Cfr13I GGNCC 3 cut(s) 264, 343, 496
ClaI ATCGAT 1 cut(s) 115
Csp6I GTAC 1 cut(s) 164
CviJI RGCY 8 cut(s) 10, 170, 216, 234, 266, 327, 485, 497
CviKI_1 RGCY 8 cut(s) 10, 170, 216, 234, 266, 327, 485, 497
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 138, 411
DpnII GATC 2 cut(s) 136, 409
EciI GGCGGA 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 343
Eco47III AGCGCT 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaiI YATR 7 cut(s) 30, 157, 279, 285, 334, 423, 428
FokI GGATG 2 cut(s) 401, 419
FspBI CTAG 2 cut(s) 512, 543
GlaI GCGC 2 cut(s) 126, 150
GsaI CCCAGC 2 cut(s) 48, 489
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 2 cut(s) 266, 497
HhaI GCGC 2 cut(s) 127, 151
Hin6I GCGC 2 cut(s) 125, 149
HinP1I GCGC 2 cut(s) 125, 149
HinfI GANTC 4 cut(s) 104, 269, 430, 560
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 3 cut(s) 109, 364, 565
Hpy188III TCNNGA 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 343, 397
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 309, 503, 536
HpyF3I CTNAG 1 cut(s) 21
HspAI GCGC 2 cut(s) 125, 149
Kzo9I GATC 2 cut(s) 136, 409
LpnPI CCDG 7 cut(s) 30, 342, 359, 402, 419, 471, 521
LweI GCATC 1 cut(s) 379
MaeI CTAG 2 cut(s) 512, 543
MaeIII GTNAC 2 cut(s) 196, 352
MalI GATC 2 cut(s) 138, 411
MboI GATC 2 cut(s) 136, 409
MboII GAAGA 2 cut(s) 266, 460
MfeI CAATTG 1 cut(s) 456
MluCI AATT 4 cut(s) 65, 280, 295, 456
MlyI GAGTC 2 cut(s) 263, 439
MnlI CCTC 4 cut(s) 178, 508, 509, 520
MseI TTAA 1 cut(s) 577
MslI CAYNNNNRTG 1 cut(s) 282
MunI CAATTG 1 cut(s) 456
MwoI GCNNNNNNNGC 4 cut(s) 157, 309, 503, 536
NdeII GATC 2 cut(s) 136, 409
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 104, 560
PleI GAGTC 2 cut(s) 263, 438
PpsI GAGTC 2 cut(s) 263, 438
PspFI CCCAGC 2 cut(s) 44, 485
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 3 cut(s) 264, 343, 496
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 577
Sau3AI GATC 2 cut(s) 136, 409
Sau96I GGNCC 3 cut(s) 264, 343, 496
SchI GAGTC 2 cut(s) 263, 439
SetI ASST 4 cut(s) 189, 236, 354, 477
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 4 cut(s) 65, 280, 295, 456
SsiI CCGC 1 cut(s) 192
SspMI CTAG 2 cut(s) 512, 543
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 3 cut(s) 115, 139, 272
TasI AATT 4 cut(s) 65, 280, 295, 456
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 2 cut(s) 104, 560
Tru1I TTAA 1 cut(s) 577
Tru9I TTAA 1 cut(s) 577
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 461
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XspI CTAG 2 cut(s) 512, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.