RLG00000023244

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010603
Physical Location & Seq
Reverse (-)
20444131 .. 20451209
7079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023244

Sequence Viewer

Length: 774 bp
ATGGTTGATTCTCTAGCTGACAGAACAAACTCAAACAAGCGTAAGCAGCTGGTTCCGTATGCTGCTGCTATGTTCTCTATCTTTTTTTTGTTTGCACAGCCGTGTATGCGAAGCATTATATTATATCTAAACAAGTTGGGCCGTCTGAGCACGCAAATTGCCTTTGCCTTTTGTCTAAGCCCGATTTCATTCATTCTATCTATAACTCTGTGCCTTTTTCTCTCGAGTCTCTCAGCTCAACTGATCTCAAACTGGGCATCTCTCAAGTCTGTAGCGAACCCCCAGCCATCGACCACAGAGCACCCGCGGCCCTACCGGAACCCTAATCTCAGATTCATCAACGGAGGTGCATTTGAACAAAACCCTAATTTCAGCAGCGGCGGTGCATTTGAAGAAAACCCTGATAGCCCATCTAACAATCAAGAAGAAGAAGAAATTGGGGCCAATTTTTTGGAGGGCTTGAAGTCTTCATCGAAGTTGATTGACGCGTTTTTGTTTGGTTGCCCAAAATACCACCGGCACTCTCTTTCTCACCTTTATCAGTTGATCAATCAGGAGCGAAAAACAAGTATTTATGAAGTTCTCCAGACAATAACGTGTTCTTTTGCTTCAGAGAGAGGGGAGAAGTTGGGTGATTCAGTTGGATATAAGGTTCGATTGCTAGTTGATGGAAATTTGAAAGGTATAACTCATGTCATTGTGGATGAGATTCACGAACGCAGAATGAATGAAGTTGCACTCACCAACAACTATGTACAAGGCTTCCCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001047 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042221 GO:0042623 GO:0042826 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043330 GO:0043331 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind dsrm

Protein Analysis

258

Amino Acids

28.79

Weight (kDa)

7.67

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 307, 488
AciI CCGC 4 cut(s) 305, 307, 378, 381
AcsI RAATTY 1 cut(s) 673
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 1 cut(s) 756
AflIII ACRYGT 2 cut(s) 486, 596
AgsI TTSAA 4 cut(s) 356, 392, 463, 679
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AleI CACNNNNGTG 1 cut(s) 100
AloI GAACNNNNNNTCC 2 cut(s) 636, 668
AluBI AGCT 4 cut(s) 17, 49, 236, 771
AluI AGCT 4 cut(s) 17, 49, 236, 771
Alw21I GWGCWC 2 cut(s) 152, 303
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 3 cut(s) 139, 308, 441
ApeKI GCWGC 4 cut(s) 46, 62, 65, 375
ApoI RAATTY 1 cut(s) 673
AspS9I GGNCC 3 cut(s) 139, 309, 441
AsuHPI GGTGA 3 cut(s) 524, 644, 733
AvaI CYCGRG 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 2 cut(s) 152, 303
BbvI GCAGC 4 cut(s) 49, 52, 58, 387
BccI CCATC 3 cut(s) 295, 418, 662
BceAI ACGGC 2 cut(s) 85, 126
BclI TGATCA 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 4 cut(s) 14, 662, 768, 772
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 6 cut(s) 47, 63, 66, 308, 376, 379
BlsI GCNGC 6 cut(s) 48, 64, 67, 309, 377, 380
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 3 cut(s) 139, 309, 441
BmiI GGNNCC 3 cut(s) 54, 320, 442
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 459
BpmI CTGGAG 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 315
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 709
BseMII CTCAG 3 cut(s) 137, 246, 343
BseNI ACTGG 1 cut(s) 257
BseXI GCAGC 4 cut(s) 49, 52, 58, 387
BseYI CCCAGC 1 cut(s) 282
Bsh1236I CGCG 2 cut(s) 307, 488
BshFI GGCC 3 cut(s) 141, 310, 443
BsiHKAI GWGCWC 2 cut(s) 152, 303
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 2 cut(s) 316, 517
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 3 cut(s) 141, 310, 443
BsoBI CYCGRG 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 152, 303
Bsp1407I TGTACA 1 cut(s) 754
Bsp143I GATC 2 cut(s) 243, 546
BspACI CCGC 4 cut(s) 305, 307, 378, 381
BspANI GGCC 3 cut(s) 141, 310, 443
BspCNI CTCAG 3 cut(s) 138, 245, 342
BspFNI CGCG 2 cut(s) 307, 488
BspLI GGNNCC 3 cut(s) 54, 320, 442
BsrFI RCCGGY 1 cut(s) 516
BsrGI TGTACA 1 cut(s) 754
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 2 cut(s) 243, 546
BstAUI TGTACA 1 cut(s) 754
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 4 cut(s) 146, 176, 232, 329
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 709
BstFNI CGCG 2 cut(s) 307, 488
BstKTI GATC 2 cut(s) 246, 549
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 243, 546
BstMWI GCNNNNNNNGC 5 cut(s) 46, 106, 147, 307, 768
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 2 cut(s) 307, 488
BstV1I GCAGC 4 cut(s) 49, 52, 58, 387
BstV2I GAAGAC 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 451
BsuRI GGCC 3 cut(s) 141, 310, 443
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 709
Cac8I GCNNGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 3 cut(s) 139, 309, 441
Cfr42I CCGCGG 1 cut(s) 308
CseI GACGC 1 cut(s) 494
Csp6I GTAC 1 cut(s) 755
CviAII CATG 1 cut(s) 692
CviQI GTAC 1 cut(s) 755
DdeI CTNAG 4 cut(s) 146, 176, 232, 329
DpnI GATC 2 cut(s) 245, 548
DpnII GATC 2 cut(s) 243, 546
Eco57I CTGAAG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 223
FaeI CATG 1 cut(s) 695
FatI CATG 1 cut(s) 691
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 1 cut(s) 546
Fnu4HI GCNGC 6 cut(s) 47, 63, 66, 308, 376, 379
FokI GGATG 1 cut(s) 716
Fsp4HI GCNGC 6 cut(s) 47, 63, 66, 308, 376, 379
FspBI CTAG 4 cut(s) 14, 662, 768, 772
GluI GCNGC 6 cut(s) 47, 63, 66, 308, 376, 379
GsaI CCCAGC 1 cut(s) 286
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 3 cut(s) 141, 310, 443
HapII CCGG 2 cut(s) 316, 517
HgaI GACGC 1 cut(s) 494
Hin1II CATG 1 cut(s) 695
HinfI GANTC 5 cut(s) 8, 226, 333, 635, 709
HpaII CCGG 2 cut(s) 316, 517
HphI GGTGA 3 cut(s) 524, 644, 733
Hpy188I TCNGA 3 cut(s) 147, 332, 613
Hpy188III TCNNGA 5 cut(s) 223, 422, 554, 586, 713
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 4 cut(s) 95, 350, 386, 737
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 106, 147, 307, 768
HpyF3I CTNAG 4 cut(s) 146, 176, 232, 329
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 1 cut(s) 695
Ksp22I TGATCA 1 cut(s) 546
KspI CCGCGG 1 cut(s) 308
Kzo9I GATC 2 cut(s) 243, 546
LmnI GCTCC 1 cut(s) 556
LpnPI CCDG 8 cut(s) 35, 238, 296, 329, 414, 530, 539, 599
Lsp1109I GCAGC 4 cut(s) 49, 52, 58, 387
LweI GCATC 1 cut(s) 266
MaeI CTAG 4 cut(s) 14, 662, 768, 772
MaeII ACGT 1 cut(s) 596
MalI GATC 2 cut(s) 245, 548
MboI GATC 2 cut(s) 243, 546
MboII GAAGA 5 cut(s) 404, 437, 440, 443, 459
MhlI GDGCHC 2 cut(s) 152, 303
MluCI AATT 5 cut(s) 156, 367, 435, 445, 673
MluI ACGCGT 1 cut(s) 486
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 3 cut(s) 338, 448, 611
MslI CAYNNNNRTG 1 cut(s) 100
MspA1I CMGCKG 3 cut(s) 49, 307, 378
MspI CCGG 2 cut(s) 316, 517
MvnI CGCG 2 cut(s) 307, 488
MwoI GCNNNNNNNGC 5 cut(s) 46, 106, 147, 307, 768
NdeII GATC 2 cut(s) 243, 546
NlaIII CATG 1 cut(s) 695
NlaIV GGNNCC 3 cut(s) 54, 320, 442
OliI CACNNNNGTG 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 223
PfeI GAWTC 4 cut(s) 8, 333, 635, 709
PkrI GCNGC 6 cut(s) 48, 64, 67, 309, 377, 380
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 282
PspN4I GGNNCC 3 cut(s) 54, 320, 442
PspPI GGNCC 3 cut(s) 139, 309, 441
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 1 cut(s) 756
RsaNI GTAC 1 cut(s) 755
RseI CAYNNNNRTG 1 cut(s) 100
SacII CCGCGG 1 cut(s) 308
SatI GCNGC 6 cut(s) 47, 63, 66, 308, 376, 379
Sau3AI GATC 2 cut(s) 243, 546
Sau96I GGNCC 3 cut(s) 139, 309, 441
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 2 cut(s) 152, 303
SetI ASST 9 cut(s) 19, 51, 238, 349, 537, 599, 654, 685, 773
SfaNI GCATC 1 cut(s) 266
SfcI CTRYAG 1 cut(s) 270
Sfr274I CTCGAG 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 308
SgrBI CCGCGG 1 cut(s) 308
SlaI CTCGAG 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 2 cut(s) 223, 263
SmoI CTYRAG 2 cut(s) 223, 263
Sse9I AATT 5 cut(s) 156, 367, 435, 445, 673
SsiI CCGC 4 cut(s) 305, 307, 378, 381
SspMI CTAG 4 cut(s) 14, 662, 768, 772
TaiI ACGT 1 cut(s) 599
TaqI TCGA 4 cut(s) 224, 290, 473, 655
TasI AATT 5 cut(s) 156, 367, 435, 445, 673
TatI WGTACW 1 cut(s) 754
TauI GCSGC 2 cut(s) 310, 381
TfiI GAWTC 4 cut(s) 8, 333, 635, 709
TseI GCWGC 4 cut(s) 46, 62, 65, 375
TspDTI ATGAA 7 cut(s) 177, 181, 325, 459, 591, 740, 744
TspGWI ACGGA 2 cut(s) 45, 357
XapI RAATTY 1 cut(s) 673
XhoI CTCGAG 1 cut(s) 223
XspI CTAG 4 cut(s) 14, 662, 768, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.