RchiOBHm_Chr2g0145471

protein STRUBBELIG-RECEPTOR FAMILY 5-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
63139442 .. 63141438
1997 bp
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UTR
Exon/CDS
Intron
PRQ51533

Sequence Viewer

Length: 333 bp
ATGGTTACAGTCCAAGTTCATGGGTTGGATAAAACCCCAAGCTCTGCTACTTCAGAGCAAGAAGAAAAAGGGGCTGACTCGAACCATAATTATATGCAATCTAATTATCGCTTTGATTGCCTTATCCTTGGTCACCACTTATGTCTATTGGTCCAGAAGGTCACTGGGTCTGACTTTTCTGCTGCAGAGAAAATGGATGCGTTTTCAAAGAAGGATGATCTTTCTGGTTATGCTTTACTGCCCTTAATGGTGATGTATAACAGCTTAACCTGTAAGTCAAAACCAAGTGGTTGGAAATCAAGTGGCGGTGACCCTTGTGGTGATTCAAATTGA

Protein Analysis

110

Amino Acids

11.95

Weight (kDa)

5.7

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 36
AgsI TTSAA 2 cut(s) 207, 327
AluBI AGCT 2 cut(s) 42, 264
AluI AGCT 2 cut(s) 42, 264
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 4 cut(s) 125, 262, 320, 332
AvaII GGWCC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 202, 220
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 187
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 10
BstEII GGTNACC 2 cut(s) 131, 308
BstF5I GGATG 2 cut(s) 202, 220
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstPI GGTNACC 2 cut(s) 131, 308
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 169
BstXI CCANNNNNNTGG 2 cut(s) 20, 291
BtsCI GGATG 2 cut(s) 202, 220
BtsIMutI CAGTG 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 151
CviAII CATG 1 cut(s) 20
CviJI RGCY 3 cut(s) 42, 74, 264
CviKI_1 RGCY 3 cut(s) 42, 74, 264
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 36
Eco91I GGTNACC 2 cut(s) 131, 308
EcoO65I GGTNACC 2 cut(s) 131, 308
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 1 cut(s) 23
FaiI YATR 7 cut(s) 21, 87, 93, 95, 142, 231, 258
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 209, 227
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 23
HinfI GANTC 2 cut(s) 77, 323
HphI GGTGA 4 cut(s) 125, 262, 320, 332
Hpy188I TCNGA 2 cut(s) 55, 172
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 151, 205
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 97, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 150, 167, 210, 283
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 187
MaeIII GTNAC 4 cut(s) 4, 131, 160, 308
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 1 cut(s) 74
MluCI AATT 3 cut(s) 88, 103, 328
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 6, 272
MseI TTAA 2 cut(s) 245, 266
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 23
NmuCI GTSAC 3 cut(s) 131, 160, 308
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspEI GGTNACC 2 cut(s) 131, 308
PspPI GGNCC 1 cut(s) 151
PstI CTGCAG 1 cut(s) 187
SaqAI TTAA 2 cut(s) 245, 266
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 71
SetI ASST 4 cut(s) 44, 162, 266, 272
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 151
Sse9I AATT 3 cut(s) 88, 103, 328
SsiI CCGC 1 cut(s) 306
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 80
TasI AATT 3 cut(s) 88, 103, 328
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 245, 266
Tru9I TTAA 2 cut(s) 245, 266
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 3 cut(s) 131, 160, 308
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 3 cut(s) 131, 160, 308
TspDTI ATGAA 1 cut(s) 8
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.