Rh1BG186000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010603
Physical Location & Seq
Forward (+)
30033155 .. 30052501
19347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG186000.1

Sequence Viewer

Length: 378 bp
ATGGTGTCTTGTGGCATACCTGGGATTGGTTTTGCAGATGGGCAAGGAAGCATGCTCCGGGATGGGTTGCTATGGCGGTGGAATATGCAGGTTTGTTTGGTGTCCAACAGGTGGTCCAGATCTTTTGGAGGGGAAGATGGTGCCGTCATCTGTTCGACGATGAGTCTCTCAGCTCAACTGATCTCAAACTGGGCATCTCTCAAGTCTGTAGCGAACCCCCAGCCATCGACCACAGAGCACCTGCGGTCCTACCGGAACCCTAATCTCAGATTCATCAACGGAGGTGCATTTGAACAAAACCCTAATTTCAGCAGCGGCGGTGCATTTGAAGAAAACCCTGATAGCCCATCTAACAATCGTCTGAGAAGGACCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

9.14

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 249
Acc36I ACCTGC 2 cut(s) 79, 249
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 111
AciI CCGC 4 cut(s) 76, 244, 315, 318
AfiI CCNNNNNNNGG 2 cut(s) 26, 111
AgsI TTSAA 2 cut(s) 293, 329
AhdI GACNNNNNGTC 1 cut(s) 162
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 312
AspS9I GGNCC 3 cut(s) 114, 246, 369
AsuC2I CCSGG 1 cut(s) 59
AvaII GGWCC 3 cut(s) 114, 246, 369
BanI GGYRCC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 324
BccI CCATC 5 cut(s) 32, 56, 131, 232, 355
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 21
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 207
BfuAI ACCTGC 2 cut(s) 79, 249
BglII AGATCT 1 cut(s) 119
BisI GCNGC 2 cut(s) 313, 316
BlsI GCNGC 2 cut(s) 314, 317
Bme1390I CCNGG 2 cut(s) 21, 59
Bme18I GGWCC 3 cut(s) 114, 246, 369
BmeRI GACNNNNNGTC 1 cut(s) 162
BmgT120I GGNCC 3 cut(s) 114, 246, 369
BmiI GGNNCC 3 cut(s) 142, 257, 371
BmrFI CCNGG 2 cut(s) 21, 59
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 111
Bse1I ACTGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 26, 111
BseMII CTCAG 3 cut(s) 183, 280, 353
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 324
BseYI CCCAGC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 2 cut(s) 58, 253
BslI CCNNNNNNNGG 2 cut(s) 26, 111
BsmAI GTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 119, 180
BspACI CCGC 4 cut(s) 76, 244, 315, 318
BspCNI CTCAG 3 cut(s) 182, 279, 354
BspLI GGNNCC 3 cut(s) 142, 257, 371
BspMI ACCTGC 2 cut(s) 79, 249
BspT107I GGYRCC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 2 cut(s) 119, 180
Bst2UI CCWGG 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 3 cut(s) 169, 266, 362
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 2 cut(s) 122, 183
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 119, 180
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 19, 57
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BtsCI GGATG 1 cut(s) 67
BveI ACCTGC 2 cut(s) 79, 249
Cac8I GCNNGC 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 114, 246, 369
CviAII CATG 1 cut(s) 52
CviJI RGCY 3 cut(s) 173, 223, 345
CviKI_1 RGCY 3 cut(s) 173, 223, 345
DdeI CTNAG 3 cut(s) 169, 266, 362
DpnI GATC 2 cut(s) 121, 182
DpnII GATC 2 cut(s) 119, 180
DriI GACNNNNNGTC 1 cut(s) 162
Eam1105I GACNNNNNGTC 1 cut(s) 162
Eco47I GGWCC 3 cut(s) 114, 246, 369
EcoO109I RGGNCCY 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 19
FaeI CATG 1 cut(s) 55
FaiI YATR 4 cut(s) 17, 53, 73, 86
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 313, 316
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 313, 316
GluI GCNGC 2 cut(s) 313, 316
GsaI CCCAGC 1 cut(s) 223
HapII CCGG 2 cut(s) 58, 253
Hin1II CATG 1 cut(s) 55
HinfI GANTC 2 cut(s) 163, 270
HpaII CCGG 2 cut(s) 58, 253
Hpy188I TCNGA 2 cut(s) 269, 363
Hpy188III TCNNGA 1 cut(s) 117
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 35, 88, 287, 323
HpyF3I CTNAG 3 cut(s) 169, 266, 362
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 2 cut(s) 119, 180
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 1 cut(s) 203
MalI GATC 2 cut(s) 121, 182
MboI GATC 2 cut(s) 119, 180
MboII GAAGA 2 cut(s) 146, 341
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 304
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 2 cut(s) 122, 275
MspA1I CMGCKG 1 cut(s) 315
MspI CCGG 2 cut(s) 58, 253
MspR9I CCNGG 2 cut(s) 21, 59
MvaI CCWGG 1 cut(s) 21
NciI CCSGG 1 cut(s) 59
NdeII GATC 2 cut(s) 119, 180
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 3 cut(s) 142, 257, 371
NspI RCATGY 1 cut(s) 55
PaeI GCATGC 1 cut(s) 55
PaqCI CACCTGC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 57
PkrI GCNGC 2 cut(s) 314, 317
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PpuMI RGGWCCY 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 3 cut(s) 142, 257, 371
PspPI GGNCC 3 cut(s) 114, 246, 369
PspPPI RGGWCCY 1 cut(s) 369
PsuI RGATCY 1 cut(s) 119
SatI GCNGC 2 cut(s) 313, 316
Sau3AI GATC 2 cut(s) 119, 180
Sau96I GGNCC 3 cut(s) 114, 246, 369
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 21, 59
SduI GDGCHC 1 cut(s) 240
SetI ASST 6 cut(s) 22, 93, 113, 175, 243, 286
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 3 cut(s) 114, 246, 369
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SphI GCATGC 1 cut(s) 55
Sse9I AATT 1 cut(s) 304
SsiI CCGC 4 cut(s) 76, 244, 315, 318
StyD4I CCNGG 2 cut(s) 19, 57
TaqI TCGA 2 cut(s) 155, 227
TasI AATT 1 cut(s) 304
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 1 cut(s) 270
TseI GCWGC 1 cut(s) 312
TspDTI ATGAA 1 cut(s) 262
TspGWI ACGGA 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 111
VpaK11BI GGWCC 3 cut(s) 114, 246, 369
XceI RCATGY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.