Rw3G028510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0010603
Physical Location & Seq
Reverse (-)
42617260 .. 42621261
4002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G028510.1

Sequence Viewer

Length: 297 bp
ATGAGAAACAAATACAACACAGCAACCCAACTGATCTCAAACTGGGCATCTCTCAAGTCTGTAGCGAACCCCCAGCCATCGACCACAGAGCACCCGCGGCCCTACCGGAACCCTTATCTCAGATTCATCAACGGAGGTGCATTTGAACAAAACCCTAATTTCAGCAGCGGCGGTGCATTTGAAGAAAACCCTGATAGCCCATCAAACAATGGTCTGAGAAGACCCGTTGAAGGAAGTAGAGAGAGAGGGGAGAAGTTGGGTGATTCAGTTGGATATAAGGTTCGGTTAGAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.96

Weight (kDa)

9.52

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 97
AciI CCGC 4 cut(s) 95, 97, 168, 171
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 3 cut(s) 146, 182, 230
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 284
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 85, 208
BcoDI GTCTC 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 3 cut(s) 98, 166, 169
BlsI GCNGC 3 cut(s) 99, 167, 170
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 133, 206
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 284
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 4 cut(s) 95, 97, 168, 171
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 2 cut(s) 132, 207
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 119, 215, 294
BstDSI CCRYGG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 60
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 99
Cfr42I CCGCGG 1 cut(s) 98
CviJI RGCY 3 cut(s) 76, 100, 198
CviKI_1 RGCY 3 cut(s) 76, 100, 198
DdeI CTNAG 3 cut(s) 119, 215, 294
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
FaiI YATR 1 cut(s) 276
FauI CCCGC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 98, 166, 169
Fsp4HI GCNGC 3 cut(s) 98, 166, 169
GluI GCNGC 3 cut(s) 98, 166, 169
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 106
HinfI GANTC 2 cut(s) 123, 263
HpaII CCGG 1 cut(s) 106
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 122, 216
HpyAV CCTTC 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 140, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 3 cut(s) 119, 215, 294
KspI CCGCGG 1 cut(s) 98
Kzo9I GATC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 28, 86, 119, 204
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 56
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 2 cut(s) 194, 231
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 2 cut(s) 128, 239
MspA1I CMGCKG 2 cut(s) 97, 168
MspI CCGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 123, 263
PkrI GCNGC 3 cut(s) 99, 167, 170
PspFI CCCAGC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 99
SacII CCGCGG 1 cut(s) 98
SatI GCNGC 3 cut(s) 98, 166, 169
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 93
SetI ASST 2 cut(s) 139, 282
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 60
Sfr303I CCGCGG 1 cut(s) 98
SgeI CNNG 8 cut(s) 55, 67, 85, 106, 108, 118, 203, 236
SgrBI CCGCGG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 157
SsiI CCGC 4 cut(s) 95, 97, 168, 171
TaqI TCGA 1 cut(s) 80
TasI AATT 1 cut(s) 157
TauI GCSGC 2 cut(s) 100, 171
TfiI GAWTC 2 cut(s) 123, 263
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.