Rh6AG004600

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010603
Physical Location & Seq
Forward (+)
690787 .. 693462
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG004600.1

Sequence Viewer

Length: 264 bp
ATGGAACAAAAGAATGGCGTTGCGGATCCTAATCATGGAGGATTGTGGATTGTGGTCTGTATAGCAACAAGGAAAGTTGATGGAAATTTGAAAAGTATAACTCATGTCATTGTGGATGAGATTCACGAACGCAGAATGAATGAAGGATGTTTTGGAAAGTACGGGTTGCAGATTCCTCACTTGAGACCTGCTGAATATAAGAGAACTGGTAATGCAGCAGAAGTGTTATGTTCTATATTGGGCAAAAGGCAGAAATATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001047 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042221 GO:0042623 GO:0042826 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043330 GO:0043331 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind dsrm

Protein Analysis

87

Amino Acids

9.77

Weight (kDa)

9.15

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 20, 33
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 20, 33
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 85
BamHI GGATCC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 30
BseGI GGATG 2 cut(s) 121, 152
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 27
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 2 cut(s) 20, 33
BspTNI GGTCTC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 211
BssMI GATC 1 cut(s) 25
BstF5I GGATG 2 cut(s) 121, 152
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BtsCI GGATG 2 cut(s) 121, 152
BveI ACCTGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 35, 104
CviQI GTAC 1 cut(s) 160
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 178
FaeI CATG 2 cut(s) 38, 107
FaiI YATR 9 cut(s) 36, 62, 98, 105, 198, 229, 236, 258, 262
FatI CATG 2 cut(s) 34, 103
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 128, 159
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 38, 107
HinfI GANTC 2 cut(s) 121, 172
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 169, 215
Hsp92II CATG 2 cut(s) 38, 107
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 2 cut(s) 192, 201
Lsp1109I GCAGC 1 cut(s) 227
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MflI RGATCY 1 cut(s) 25
MluCI AATT 1 cut(s) 85
MnlI CCTC 2 cut(s) 32, 186
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 38, 107
NlaIV GGNNCC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 121, 172
PkrI GCNGC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 25
SetI ASST 1 cut(s) 190
SgeI CNNG 8 cut(s) 47, 81, 116, 137, 175, 193, 200, 219
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 1 cut(s) 85
SsiI CCGC 1 cut(s) 23
TasI AATT 1 cut(s) 85
TfiI GAWTC 2 cut(s) 121, 172
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 152, 156
XapI RAATTY 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.