Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010603

Physical Location & Seq

Genomic Coordinates Forward (+)

2929165 .. 2931302

Gene Structure 2138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0037900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCTTACGGACGCTCTTAGTCCGAAGCTTACGAACACTCTTAAAAGGTGGGATGTAGAAGAAGGGAGGTTGCAAGTCCCCGAGAAAAAGAAGAAGAAACTTGCGGAGACGCTGCAAGGGCAGCAGGCGCACGGGCGCGCAAGAGGCTGCGGTGGCAGCAGGCGCACAGGCGTGCAGGGAGGGCTGCAGGGGCAGCAGGGTGCAGCAAGGCTAGCGTGGGCTAGGTGCAGCGTTGGTGAAGCTAATGGTGATGAAGATTTCGTAATCTCCAAAACTGATGATTTCTTATTCCATACCTTTGTAGCTCAATATGCGAAATCAAATGGTTCTCTTAGCAAGAAGGCGACGCCGGCAATTTCAAATGGTTCTCTTAGCAAGAAGGCGACACTGGCAATTTCACTAGGATCTATTACAGTTTTCTTTCTCTTACTTACCCTTTATTGGTTGGCAAGCGTAGACGAAATAAATGTTCATTTATATATACTTACGGCCGGGTCAACCTACTTCGAAGAATCTTCTGGTGGAACAGCTTTTGATGATAGTAGAATAAACTCAGAGTTAGCATTCTTTCATCTAAAAACCATAACAACCGCCACAAACAATTTCTCCATTGAAAACAAGCTTGGAGAAGGAGGTTTTGGCTCCGTTTATAAGGGCATACTTCACAATGGAAAGGAAATAGCAGTAAAAAGACTATCCAAGTTTTCTGGCCAAGGAGTTGAAGAGTTTAAGAATGAAGTTCTTCTGATTGCAAAACTCCAACACAGAAACCTTGTCAGGATTTTAGATTGTTGTGTTGAAGCTGAAGAAAAGATTATAATCTATGAATACTTGCCAAACAAAAGTTTGGACTCTTTCATCTTTAATGAAACAAAGAGAGCACTTTTAAATTGGACAAAACGTTTCGAGATTATCTTTGGGATTGCTAGAGGGGTATTATATCTTCATGAAGATTCGAGATTAAGAATTATCCATAGAGATCTAAAGGCCAGCAATGTCCTATTGGATAATTCTTTGAACCCAAAAATTGCAGATTTTGGTATGGCTAGAATATTTAGTGGGGATCAAAGTGAAGTGAATACCAATCGTGTGGTTGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

40.63

Weight (kDa)

9.09

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	203 - 358	2.3e-33	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	203 - 367	2.5e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010603)

Species	Orthologous Gene IDs
malus_domestica	MD02G1197000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0141241 RchiOBHm_Chr2g0145471 RchiOBHm_Chr7g0193751
rosa_laevigata	RLG00000000961 RLG00000008242 RLG00000008722 RLG00000023244 RLG00000032752
rosa_multiflora	Rmu_sc0008822.1_g000007
rosa_roxburghii	Rroxscaffold_1G00041370
rosa_rugosa	Rorug05G0037800 Rorug05G0037900
rosa_samantha	Rh1AG207800 Rh1BG186000 Rh1DG215600 Rh2BG456500 Rh4BG096200 Rh5BG071900 Rh6AG004600
rosa_wichuraiana	Rw3G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	651, 818
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	1 cut(s)	138
AciI	CCGC	3 cut(s)	104, 150, 591
AclI	AACGTT	1 cut(s)	901
AclWI	GGATC	2 cut(s)	412, 1071
AcoI	YGGCCR	2 cut(s)	489, 709
AcuI	CTGAAG	1 cut(s)	825
AcyI	GRCGYC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	441
AgsI	TTSAA	5 cut(s)	360, 614, 722, 800, 1018
AjuI	GAANNNNNNNTTGG	4 cut(s)	606, 621, 638, 653
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	6 cut(s)	28, 242, 305, 530, 622, 803
AluI	AGCT	6 cut(s)	28, 242, 305, 530, 622, 803
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	412, 1071
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	489, 709, 987
ApeKI	GCWGC	8 cut(s)	112, 121, 147, 156, 184, 193, 203, 228
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	4 cut(s)	130, 138, 140, 165
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	2 cut(s)	248, 260
AsuII	TTCGAA	1 cut(s)	507
AsuNHI	GCTAGC	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	711
BarI	GAAGNNNNNNTAC	2 cut(s)	927, 959
Bbv12I	GWGCWC	1 cut(s)	883
BbvI	GCAGC	8 cut(s)	99, 133, 134, 168, 171, 205, 215, 240
BceAI	ACGGC	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	5 cut(s)	212, 222, 401, 927, 1047
BfmI	CTRYAG	1 cut(s)	185
BglII	AGATCT	1 cut(s)	979
BisI	GCNGC	8 cut(s)	113, 122, 148, 157, 185, 194, 204, 229
BlsI	GCNGC	8 cut(s)	114, 123, 149, 158, 186, 195, 205, 230
Bme1390I	CCNGG	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	1 cut(s)	493
BmtI	GCTAGC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	493
BsaBI	GATNNNNATC	1 cut(s)	818
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	712
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	1000
Bse8I	GATNNNNATC	1 cut(s)	818
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	818
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	1000
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	393
BsePI	GCGCGC	1 cut(s)	136
BseX3I	CGGCCG	1 cut(s)	489
BseXI	GCAGC	8 cut(s)	99, 133, 134, 168, 171, 205, 215, 240
BsgI	GTGCAG	3 cut(s)	194, 222, 247
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	492
BshFI	GGCC	3 cut(s)	491, 711, 989
BsiEI	CGRYCG	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	883
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	350, 492
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	3 cut(s)	491, 711, 989
BsoBI	CYCGRG	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	3 cut(s)	404, 979, 1063
BspACI	CCGC	3 cut(s)	104, 150, 591
BspANI	GGCC	3 cut(s)	491, 711, 989
BspCNI	CTCAG	1 cut(s)	566
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	1 cut(s)	643
BspMAI	CTGCAG	1 cut(s)	189
BspOI	GCTAGC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	412, 1071
BspT104I	TTCGAA	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	1000
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	712
BssHII	GCGCGC	1 cut(s)	136
BssMI	GATC	3 cut(s)	404, 979, 1063
BssNI	GRCGYC	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	712
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	717
BstACI	GRCGYC	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	8 cut(s)	126, 138, 161, 173, 213, 351, 451, 991
BstDEI	CTNAG	4 cut(s)	17, 332, 371, 553
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	4 cut(s)	130, 138, 140, 165
BstKTI	GATC	3 cut(s)	407, 982, 1066
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	404, 979, 1063
BstMCI	CGRYCG	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	185
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	8 cut(s)	99, 133, 134, 168, 171, 205, 215, 240
BstX2I	RGATCY	2 cut(s)	404, 979
BstXI	CCANNNNNNTGG	1 cut(s)	1090
BstYI	RGATCY	2 cut(s)	404, 979
BstZI	CGGCCG	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	491, 711, 989
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	8 cut(s)	126, 138, 161, 173, 213, 351, 451, 991
CciI	TCATGA	1 cut(s)	946
CfoI	GCGC	4 cut(s)	130, 138, 140, 165
Cfr10I	RCCGGY	1 cut(s)	349
CseI	GACGC	3 cut(s)	20, 118, 355
CviAII	CATG	1 cut(s)	947
DdeI	CTNAG	4 cut(s)	17, 332, 371, 553
DpnI	GATC	3 cut(s)	406, 981, 1065
DpnII	GATC	3 cut(s)	404, 979, 1063
DraI	TTTAAA	1 cut(s)	888
EaeI	YGGCCR	2 cut(s)	489, 709
EagI	CGGCCG	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
EclXI	CGGCCG	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	712
Eco52I	CGGCCG	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	825
Eco88I	CYCGRG	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	712
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	950
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	8 cut(s)	113, 122, 148, 157, 185, 194, 204, 229
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	8 cut(s)	113, 122, 148, 157, 185, 194, 204, 229
FspBI	CTAG	5 cut(s)	212, 222, 401, 927, 1047
GlaI	GCGC	4 cut(s)	129, 137, 139, 164
GluI	GCNGC	8 cut(s)	113, 122, 148, 157, 185, 194, 204, 229
HaeIII	GGCC	3 cut(s)	491, 711, 989
HapII	CCGG	2 cut(s)	350, 492
HgaI	GACGC	3 cut(s)	20, 118, 355
HhaI	GCGC	4 cut(s)	130, 138, 140, 165
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	1 cut(s)	950
Hin6I	GCGC	4 cut(s)	128, 136, 138, 163
HinP1I	GCGC	4 cut(s)	128, 136, 138, 163
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	2 cut(s)	26, 620
HinfI	GANTC	3 cut(s)	512, 851, 953
HpaII	CCGG	2 cut(s)	350, 492
HphI	GGTGA	2 cut(s)	248, 260
Hpy166II	GTNNAC	2 cut(s)	457, 498
Hpy188I	TCNGA	3 cut(s)	24, 556, 747
Hpy188III	TCNNGA	4 cut(s)	778, 907, 947, 957
Hpy8I	GTNNAC	2 cut(s)	457, 498
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	4 cut(s)	56, 334, 373, 623
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	8 cut(s)	73, 115, 175, 187, 203, 228, 752, 1031
HpyF3I	CTNAG	4 cut(s)	17, 332, 371, 553
HpySE526I	ACGT	1 cut(s)	901
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	1 cut(s)	950
HspAI	GCGC	4 cut(s)	128, 136, 138, 163
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	404, 979, 1063
LmnI	GCTCC	1 cut(s)	647
Lsp1109I	GCAGC	8 cut(s)	99, 133, 134, 168, 171, 205, 215, 240
MaeI	CTAG	5 cut(s)	212, 222, 401, 927, 1047
MaeII	ACGT	1 cut(s)	901
MalI	GATC	3 cut(s)	406, 981, 1065
MboI	GATC	3 cut(s)	404, 979, 1063
MflI	RGATCY	2 cut(s)	404, 979
MhlI	GDGCHC	1 cut(s)	883
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	7 cut(s)	354, 393, 601, 889, 966, 1009, 1026
MluNI	TGGCCA	1 cut(s)	711
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	2 cut(s)	784, 1075
MnlI	CCTC	5 cut(s)	60, 137, 173, 626, 923
Mox20I	TGGCCA	1 cut(s)	711
MroNI	GCCGGC	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	5 cut(s)	42, 729, 864, 887, 962
MslI	CAYNNNNRTG	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	711
MspI	CCGG	2 cut(s)	350, 492
MspR9I	CCNGG	1 cut(s)	493
Mva1269I	GAATGC	1 cut(s)	563
MvnI	CGCG	1 cut(s)	138
NaeI	GCCGGC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	3 cut(s)	404, 979, 1063
NgoMIV	GCCGGC	1 cut(s)	349
NheI	GCTAGC	1 cut(s)	211
NlaIII	CATG	1 cut(s)	950
NlaIV	GGNNCC	1 cut(s)	643
NspV	TTCGAA	1 cut(s)	507
OliI	CACNNNNGTG	1 cut(s)	170
PagI	TCATGA	1 cut(s)	946
PauI	GCGCGC	1 cut(s)	136
PctI	GAATGC	1 cut(s)	563
PdiI	GCCGGC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	512, 953
PkrI	GCNGC	8 cut(s)	114, 123, 149, 158, 186, 195, 205, 230
PleI	GAGTC	1 cut(s)	845
PpsI	GAGTC	1 cut(s)	845
PsiI	TTATAA	2 cut(s)	651, 818
Psp1406I	AACGTT	1 cut(s)	901
PspN4I	GGNNCC	1 cut(s)	643
PstI	CTGCAG	1 cut(s)	189
PsuI	RGATCY	2 cut(s)	404, 979
PteI	GCGCGC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	5 cut(s)	42, 729, 864, 887, 962
SatI	GCNGC	8 cut(s)	113, 122, 148, 157, 185, 194, 204, 229
Sau3AI	GATC	3 cut(s)	404, 979, 1063
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	1 cut(s)	493
SduI	GDGCHC	1 cut(s)	883
SfcI	CTRYAG	1 cut(s)	185
SfuI	TTCGAA	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	7 cut(s)	354, 393, 601, 889, 966, 1009, 1026
SsiI	CCGC	3 cut(s)	104, 150, 591
SspI	AATATT	1 cut(s)	1053
SspMI	CTAG	5 cut(s)	212, 222, 401, 927, 1047
StyD4I	CCNGG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	3 cut(s)	507, 906, 956
TasI	AATT	7 cut(s)	354, 393, 601, 889, 966, 1009, 1026
TfiI	GAWTC	2 cut(s)	512, 953
Tru1I	TTAA	5 cut(s)	42, 729, 864, 887, 962
Tru9I	TTAA	5 cut(s)	42, 729, 864, 887, 962
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	8 cut(s)	112, 121, 147, 156, 184, 193, 203, 228
TspDTI	ATGAA	9 cut(s)	267, 461, 560, 750, 840, 847, 882, 935, 963
TspGWI	ACGGA	2 cut(s)	23, 634
TspRI	CASTG	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	5 cut(s)	212, 222, 401, 927, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.