Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009711

Physical Location & Seq

Genomic Coordinates Reverse (-)

34292354 .. 34293479

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1286000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAATGTAGGTCGTCCATCATGGAGGCAACCATTTGATTCATTAACTGTTCTAGAGGAAGATGCTGTGGAGAAATTGATGATACGGTGTAGCTCACTTCTGGTCGAGGATGGTTGGAGCAGGCGTCATATGATAGAAATTTTCTTGCTCGCAGGCAAGAACGGGCGAGAAGCCAGAGGCCCTCCAGAACTTGGTTTGCAAACAATGAAGAGAACTTGCAGGTTCCCCAGACTCCTGAAAGCAACGAAGAAAACACGCAGATCTTCTAGACCTTGTGAAAGCATTGAAGAAAGCATGGAGCTCATGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1

Protein Analysis

104

Amino Acids

11.91

Weight (kDa)

9.56

Isoelectric Point (pI)

83.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009711)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g03070
malus_domestica	MD02G1286000.v1.1 MD02G1286500.v1.1 MD02G1286600.v1.1 MD02G1287000.v1.1 MD11G1310600.v1.1 MD14G1215400.v1.1
prunus_persica	Prupe.2G036300_v2.0.a1 Prupe.2G036300_v2.0.a1
pyrus_communis	pycom02g24330
rosa_chinensis	RchiOBHm_Chr1g0324301
rosa_laevigata	RLG00000030205
rosa_multiflora	Rmu_sc0001850.1_g000055 Rmu_sc0004082.1_g000025
rosa_roxburghii	Rroxscaffold_159G00432680 Rroxscaffold_4G00325710
rosa_rugosa	Rorug01G0044900
rosa_samantha	Rh1AG060800 Rh1BG052000 Rh1CG063100 Rh1DG067500
rosa_wichuraiana	Rw1G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	2 cut(s)	93, 301
AluI	AGCT	2 cut(s)	93, 301
Alw21I	GWGCWC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BccI	CCATC	2 cut(s)	25, 104
BfaI	CTAG	2 cut(s)	53, 267
BfuAI	ACCTGC	1 cut(s)	210
BglII	AGATCT	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	224
BmsI	GCATC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	124
BsaXI	ACNNNNNCTCC	3 cut(s)	109, 139, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	191
BsnI	GGCC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	260
BspANI	GGCC	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	224
BspMI	ACCTGC	1 cut(s)	210
BssMI	GATC	1 cut(s)	260
BssNI	GRCGYC	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	49, 87
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	122, 150, 154
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	122, 150, 154
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	113
CviAII	CATG	3 cut(s)	21, 295, 304
CviJI	RGCY	4 cut(s)	93, 173, 180, 301
CviKI_1	RGCY	4 cut(s)	93, 173, 180, 301
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	3 cut(s)	24, 298, 307
FaiI	YATR	5 cut(s)	22, 129, 131, 296, 305
FatI	CATG	3 cut(s)	20, 294, 303
FauNDI	CATATG	1 cut(s)	129
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	53, 267
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	180
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	24, 298, 307
HinfI	GANTC	2 cut(s)	38, 231
Hpy188III	TCNNGA	5 cut(s)	53, 185, 235, 267, 309
HpyCH4III	ACNGT	2 cut(s)	49, 87
HpyCH4V	TGCA	2 cut(s)	199, 219
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	24, 298, 307
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	2 cut(s)	117, 298
LpnPI	CCDG	8 cut(s)	86, 106, 138, 187, 198, 205, 241, 248
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	53, 267
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	5 cut(s)	71, 220, 255, 259, 299
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	74, 138
MlyI	GAGTC	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	18, 49, 100, 170, 192
MseI	TTAA	1 cut(s)	44
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	24, 298, 307
NlaIV	GGNNCC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	191
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	5 cut(s)	13, 95, 224, 274, 303
SfaNI	GCATC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	74, 138
SspMI	CTAG	2 cut(s)	53, 267
SstI	GAGCTC	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	49, 87
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	74, 138
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	17, 30, 221
Van91I	CCANNNNNTGG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	138
XbaI	TCTAGA	2 cut(s)	52, 266
XspI	CTAG	2 cut(s)	53, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.