pycom02g24330

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
22464508 .. 22468993
4486 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g24330.2

Sequence Viewer

Length: 1293 bp
ATGACTTGGTTGGGTGCTTCCTCTTCTTCTTCCCCATGGATTCTCAGGAACTCGCTTCTCACAACATCCACAACCTCTTCATCTTCTTCTTCCTCTTCAAAACTCTCGAAATACCGATCATGCCCTCGCCCTCTTCGCCTCTCGAGCCGCGCCCAAGCCGACGTTGGCAGTGACTTCAATTTCGTGCTCCACGATGCTCTCGATTCTTCCGGAACCCTCACCTCCCTCGCCAGAGAGGCCAGGGAGGGGTTCTGCTCACAAATTCGCCATCTGTCTGATATAGAGAGGGAAACCAGCATTACCATCAATAGATGTGTTGATTTGGGGAAAACAGCTCTTTACATTGCAGCAGAAGATGACTCCCTTGTGTCACATTCTTCAGTTCCGCTTCCGGTGGATGCTTTTATTAGTAGGTTTGGTGATCTCTCCATGGACTATTGTTCTCACCACAACTCTTCATTTAGATCCTCGCCTGAGAAATTGTTGGAGAGTTTGGAAAACTATTTGTACGTAAATAAGGGTTTTCGAAGGACGATTGCAAGGTATCACTCTGAATCACGGGCTCTATATCTCCACTCAGTTTTGACGCATCGTTCAGGATCACCTGCAATGCTTTCACTCATATACTCAGAAATTTTGAAAATGCTTCGCCTATGGGGTTTTTTGGATTTCGATGTAGAGATATTCTTTCCTCATGATCTTCATAGTCTTCCCCGAGGTTATCATAAACAGAAAAGCAAGGAATCTGATAATGTCCACATAATGACTTCGCAAGCCCTTTTAGTGGAGATTTTAAGAAATTTGAAGGACGCATTCTGGCCGTTTCAGCATGATCAACCAGGGAATTTGTTCTTGAGGGCAGCACGTGCTGCTAACTTTATCGATAGATCAAACATAAATGAAGACAGTGGCTTTCAGCTTGCATCTGCGAAGGCTGCTCAACATAGACTAGATCGTGGTGTTTGGACTAGTGTACATTTTGGGGATATGAGGCGTGCCCTATCTGCTTGTGAACGTCTTATTCTCCTGGAAGCTGATCCGAAGGAATTAAGAGATTACAGCATTCTTCTCTACCATTGTGGATTTTACGAGGAATCACTTGAATATCTAAAGTTATATCAGGACAAAAAGGGTCGTCCACTACGGAGGCGACCTTCTGATTCGTTAACCGTTTTGGAGGAAGATGCCGCAGAGAAATTGATGATACGCCTTAACCTAATTCTGATGGAGGATGGTTGGAGCAGGCCGTCATATATTAGAAACTTTCTTGGTAACAACTCTGAACCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

49.03

Weight (kDa)

7.28

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 613
AccII CGCG 1 cut(s) 150
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 3 cut(s) 148, 386, 1188
AclWI GGATC 3 cut(s) 459, 607, 1031
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 4 cut(s) 261, 633, 799, 844
AcuI CTGAAG 1 cut(s) 363
AcvI CACGTG 1 cut(s) 866
AfaI GTAC 2 cut(s) 509, 975
AfiI CCNNNNNNNGG 2 cut(s) 246, 784
AgsI TTSAA 5 cut(s) 99, 178, 640, 805, 1103
AhlI ACTAGT 1 cut(s) 968
AjnI CCWGG 3 cut(s) 239, 838, 1026
AluBI AGCT 3 cut(s) 335, 919, 1034
AluI AGCT 3 cut(s) 335, 919, 1034
Alw21I GWGCWC 1 cut(s) 189
AlwI GGATC 3 cut(s) 459, 607, 1031
Ama87I CYCGRG 2 cut(s) 142, 714
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 3 cut(s) 237, 818, 1244
ApeKI GCWGC 4 cut(s) 347, 860, 869, 935
ApoI RAATTY 4 cut(s) 261, 633, 799, 844
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp700I GAANNNNTTC 1 cut(s) 848
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 4 cut(s) 211, 431, 437, 594
AsuII TTCGAA 1 cut(s) 526
AvaI CYCGRG 2 cut(s) 142, 714
BaeGI GKGCMC 1 cut(s) 1000
BanII GRGCYC 1 cut(s) 565
BbrPI CACGTG 1 cut(s) 866
BbsI GAAGAC 2 cut(s) 701, 909
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 4 cut(s) 359, 856, 872, 922
BccI CCATC 4 cut(s) 276, 311, 1219, 1226
BceAI ACGGC 2 cut(s) 805, 1231
BciT130I CCWGG 3 cut(s) 241, 840, 1028
BclI TGATCA 1 cut(s) 832
BcuI ACTAGT 1 cut(s) 968
BfaI CTAG 2 cut(s) 950, 969
BfuAI ACCTGC 1 cut(s) 613
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 6 cut(s) 148, 348, 861, 870, 936, 1188
BlsI GCNGC 6 cut(s) 149, 349, 862, 871, 937, 1189
Bme1390I CCNGG 3 cut(s) 241, 840, 1028
BmeT110I CYCGRG 2 cut(s) 142, 714
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 3 cut(s) 241, 840, 1028
BmsI GCATC 5 cut(s) 184, 388, 598, 932, 1174
BpiI GAAGAC 2 cut(s) 701, 909
Bpu14I TTCGAA 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 874
Bsa29I ATCGAT 1 cut(s) 882
BsaAI YACGTR 2 cut(s) 511, 866
BsaJI CCNNGG 6 cut(s) 35, 240, 429, 715, 839, 1286
BsaWI WCCGGW 2 cut(s) 209, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 784
Bse3DI GCAATG 2 cut(s) 342, 615
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 3 cut(s) 241, 840, 1028
BseCI ATCGAT 1 cut(s) 882
BseDI CCNNGG 6 cut(s) 35, 240, 429, 715, 839, 1286
BseGI GGATG 3 cut(s) 65, 403, 1237
BseLI CCNNNNNNNGG 2 cut(s) 246, 784
BseMI GCAATG 2 cut(s) 342, 615
BseMII CTCAG 4 cut(s) 58, 465, 591, 642
BseSI GKGCMC 1 cut(s) 1000
BseXI GCAGC 4 cut(s) 359, 856, 872, 922
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 239, 820, 1246
BshVI ATCGAT 1 cut(s) 882
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 2 cut(s) 142, 714
BsiSI CCGG 2 cut(s) 210, 392
BslI CCNNNNNNNGG 2 cut(s) 246, 784
BsmI GAATGC 2 cut(s) 812, 1062
BsnI GGCC 3 cut(s) 239, 820, 1246
BsoBI CYCGRG 2 cut(s) 142, 714
Bsp119I TTCGAA 1 cut(s) 526
Bsp1286I GDGCHC 3 cut(s) 189, 565, 1000
Bsp13I TCCGGA 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 9 cut(s) 116, 421, 464, 599, 697, 832, 887, 952, 1036
Bsp19I CCATGG 3 cut(s) 35, 429, 1286
BspACI CCGC 3 cut(s) 148, 386, 1188
BspANI GGCC 3 cut(s) 239, 820, 1246
BspCNI CTCAG 4 cut(s) 57, 466, 590, 641
BspDI ATCGAT 1 cut(s) 882
BspEI TCCGGA 1 cut(s) 209
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 3 cut(s) 459, 607, 1031
BspT104I TTCGAA 1 cut(s) 526
BsrDI GCAATG 2 cut(s) 342, 615
BsrGI TGTACA 1 cut(s) 973
BssECI CCNNGG 6 cut(s) 35, 240, 429, 715, 839, 1286
BssMI GATC 9 cut(s) 116, 421, 464, 599, 697, 832, 887, 952, 1036
BssT1I CCWWGG 3 cut(s) 35, 429, 1286
Bst2UI CCWGG 3 cut(s) 241, 840, 1028
Bst4CI ACNGT 2 cut(s) 908, 1171
Bst6I CTCTTC 5 cut(s) 28, 82, 100, 138, 460
BstAPI GCANNNNNTGC 2 cut(s) 866, 869
BstAUI TGTACA 1 cut(s) 973
BstBAI YACGTR 2 cut(s) 511, 866
BstBI TTCGAA 1 cut(s) 526
BstC8I GCNNGC 4 cut(s) 774, 921, 996, 1244
BstDEI CTNAG 4 cut(s) 44, 474, 577, 628
BstDSI CCRYGG 3 cut(s) 35, 429, 1286
BstF5I GGATG 3 cut(s) 65, 403, 1237
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 9 cut(s) 119, 424, 467, 602, 700, 835, 890, 955, 1039
BstMBI GATC 9 cut(s) 116, 421, 464, 599, 697, 832, 887, 952, 1036
BstMWI GCNNNNNNNGC 8 cut(s) 135, 144, 236, 826, 866, 869, 935, 1004
BstNI CCWGG 3 cut(s) 241, 840, 1028
BstSCI CCNGG 3 cut(s) 239, 838, 1026
BstSLI GKGCMC 1 cut(s) 1000
BstSNI TACGTA 1 cut(s) 511
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 4 cut(s) 359, 856, 872, 922
BstV2I GAAGAC 2 cut(s) 701, 909
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
Bsu15I ATCGAT 1 cut(s) 882
BsuRI GGCC 3 cut(s) 239, 820, 1246
BsuTUI ATCGAT 1 cut(s) 882
BtgI CCRYGG 3 cut(s) 35, 429, 1286
BtsCI GGATG 3 cut(s) 65, 403, 1237
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 175, 913
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 4 cut(s) 774, 921, 996, 1244
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 882
CseI GACGC 2 cut(s) 595, 818
Csp6I GTAC 2 cut(s) 508, 974
CviAII CATG 6 cut(s) 36, 120, 430, 695, 830, 1287
CviQI GTAC 2 cut(s) 508, 974
DdeI CTNAG 4 cut(s) 44, 474, 577, 628
DpnI GATC 9 cut(s) 118, 423, 466, 601, 699, 834, 889, 954, 1038
DpnII GATC 9 cut(s) 116, 421, 464, 599, 697, 832, 887, 952, 1036
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 5 cut(s) 28, 82, 100, 138, 460
EarI CTCTTC 5 cut(s) 28, 82, 100, 138, 460
Eco105I TACGTA 1 cut(s) 511
Eco130I CCWWGG 3 cut(s) 35, 429, 1286
Eco24I GRGCYC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 363
Eco72I CACGTG 1 cut(s) 866
Eco88I CYCGRG 2 cut(s) 142, 714
EcoRII CCWGG 3 cut(s) 239, 838, 1026
EcoT14I CCWWGG 3 cut(s) 35, 429, 1286
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 3 cut(s) 35, 429, 1286
FaeI CATG 6 cut(s) 39, 123, 433, 698, 833, 1290
FatI CATG 6 cut(s) 35, 119, 429, 694, 829, 1286
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 6 cut(s) 148, 348, 861, 870, 936, 1188
FokI GGATG 3 cut(s) 52, 410, 1244
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 6 cut(s) 148, 348, 861, 870, 936, 1188
FspBI CTAG 2 cut(s) 950, 969
GlaI GCGC 1 cut(s) 151
GluI GCNGC 6 cut(s) 148, 348, 861, 870, 936, 1188
HaeIII GGCC 3 cut(s) 239, 820, 1246
HapII CCGG 2 cut(s) 210, 392
HgaI GACGC 2 cut(s) 595, 818
HhaI GCGC 1 cut(s) 152
Hin1II CATG 6 cut(s) 39, 123, 433, 698, 833, 1290
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 1167
HindII GTYRAC 1 cut(s) 1167
HinfI GANTC 7 cut(s) 40, 203, 359, 554, 743, 1094, 1160
HpaI GTTAAC 1 cut(s) 1167
HpaII CCGG 2 cut(s) 210, 392
HphI GGTGA 4 cut(s) 211, 431, 437, 594
Hpy166II GTNNAC 5 cut(s) 757, 974, 1013, 1139, 1167
Hpy188I TCNGA 8 cut(s) 277, 553, 631, 748, 1041, 1159, 1224, 1282
Hpy188III TCNNGA 9 cut(s) 46, 106, 142, 200, 210, 597, 695, 853, 1121
Hpy8I GTNNAC 5 cut(s) 757, 974, 1013, 1139, 1167
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 5 cut(s) 522, 799, 925, 1036, 1164
HpyCH4III ACNGT 2 cut(s) 908, 1171
HpyCH4IV ACGT 4 cut(s) 162, 510, 865, 1015
HpyCH4V TGCA 4 cut(s) 347, 539, 608, 923
HpyF10VI GCNNNNNNNGC 8 cut(s) 135, 144, 236, 826, 866, 869, 935, 1004
HpyF3I CTNAG 4 cut(s) 44, 474, 577, 628
HpySE526I ACGT 4 cut(s) 162, 510, 865, 1015
Hsp92II CATG 6 cut(s) 39, 123, 433, 698, 833, 1290
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 832
KspAI GTTAAC 1 cut(s) 1167
Kzo9I GATC 9 cut(s) 116, 421, 464, 599, 697, 832, 887, 952, 1036
LmnI GCTCC 2 cut(s) 192, 1239
Lsp1109I GCAGC 4 cut(s) 359, 856, 872, 922
LweI GCATC 5 cut(s) 184, 388, 598, 932, 1174
MaeI CTAG 2 cut(s) 950, 969
MaeII ACGT 4 cut(s) 162, 510, 865, 1015
MaeIII GTNAC 3 cut(s) 170, 369, 1271
MalI GATC 9 cut(s) 118, 423, 466, 601, 699, 834, 889, 954, 1038
MboI GATC 9 cut(s) 116, 421, 464, 599, 697, 832, 887, 952, 1036
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 3 cut(s) 189, 565, 1000
MluCI AATT 9 cut(s) 178, 261, 479, 633, 799, 844, 1046, 1196, 1218
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 2 cut(s) 465, 1217
MroI TCCGGA 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 848
MseI TTAA 4 cut(s) 794, 1049, 1166, 1212
MspI CCGG 2 cut(s) 210, 392
MspR9I CCNGG 3 cut(s) 241, 840, 1028
Mva1269I GAATGC 2 cut(s) 812, 1062
MvaI CCWGG 3 cut(s) 241, 840, 1028
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 8 cut(s) 135, 144, 236, 826, 866, 869, 935, 1004
NcoI CCATGG 3 cut(s) 35, 429, 1286
NdeII GATC 9 cut(s) 116, 421, 464, 599, 697, 832, 887, 952, 1036
NlaIII CATG 6 cut(s) 39, 123, 433, 698, 833, 1290
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 170, 369
NspV TTCGAA 1 cut(s) 526
PaeR7I CTCGAG 1 cut(s) 142
PagI TCATGA 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 613
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 198
PctI GAATGC 2 cut(s) 812, 1062
PdmI GAANNNNTTC 1 cut(s) 848
PfeI GAWTC 6 cut(s) 40, 203, 554, 743, 1094, 1160
PfoI TCCNGGA 1 cut(s) 1026
PkrI GCNGC 6 cut(s) 149, 349, 862, 871, 937, 1189
PleI GAGTC 1 cut(s) 353
PmaCI CACGTG 1 cut(s) 866
PmlI CACGTG 1 cut(s) 866
PpsI GAGTC 1 cut(s) 353
Ppu21I YACGTR 2 cut(s) 511, 866
Psp6I CCWGG 3 cut(s) 239, 838, 1026
PspCI CACGTG 1 cut(s) 866
PspGI CCWGG 3 cut(s) 239, 838, 1026
PspN4I GGNNCC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 2 cut(s) 509, 975
RsaNI GTAC 2 cut(s) 508, 974
SaqAI TTAA 4 cut(s) 794, 1049, 1166, 1212
SatI GCNGC 6 cut(s) 148, 348, 861, 870, 936, 1188
Sau3AI GATC 9 cut(s) 116, 421, 464, 599, 697, 832, 887, 952, 1036
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 3 cut(s) 241, 840, 1028
SduI GDGCHC 3 cut(s) 189, 565, 1000
SfaNI GCATC 5 cut(s) 184, 388, 598, 932, 1174
Sfr274I CTCGAG 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 526
SlaI CTCGAG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 142, 853
SmoI CTYRAG 2 cut(s) 142, 853
SnaBI TACGTA 1 cut(s) 511
SpeI ACTAGT 1 cut(s) 968
Sse9I AATT 9 cut(s) 178, 261, 479, 633, 799, 844, 1046, 1196, 1218
SsiI CCGC 3 cut(s) 148, 386, 1188
SspMI CTAG 2 cut(s) 950, 969
StyD4I CCNGG 3 cut(s) 239, 838, 1026
StyI CCWWGG 3 cut(s) 35, 429, 1286
TaaI ACNGT 2 cut(s) 908, 1171
TaiI ACGT 4 cut(s) 165, 513, 868, 1018
TaqI TCGA 6 cut(s) 107, 143, 201, 526, 672, 882
TasI AATT 9 cut(s) 178, 261, 479, 633, 799, 844, 1046, 1196, 1218
TatI WGTACW 1 cut(s) 973
TauI GCSGC 2 cut(s) 150, 1190
TfiI GAWTC 6 cut(s) 40, 203, 554, 743, 1094, 1160
Tru1I TTAA 4 cut(s) 794, 1049, 1166, 1212
Tru9I TTAA 4 cut(s) 794, 1049, 1166, 1212
TscAI CASTG 2 cut(s) 175, 913
TseFI GTSAC 2 cut(s) 170, 369
TseI GCWGC 4 cut(s) 347, 860, 869, 935
Tsp45I GTSAC 2 cut(s) 170, 369
TspDTI ATGAA 4 cut(s) 69, 447, 692, 915
TspGWI ACGGA 1 cut(s) 1159
TspRI CASTG 2 cut(s) 175, 913
XapI RAATTY 4 cut(s) 261, 633, 799, 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XhoI CTCGAG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 848
XspI CTAG 2 cut(s) 950, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.