Rh1BG052000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009711
Physical Location & Seq
Forward (+)
7232704 .. 7238086
5383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG052000.1

Sequence Viewer

Length: 1029 bp
ATGAGCAGCTGGGTTGGAGCTTCTTCTTCTTCTTCTCCATGGCCTCTCAGGACCTCTTCCTCTTCCTCCTCCTATCCTTCCAAATTCTTCAAATTCCATCCATGTCCTCCTCCTCCTCCTTCTCCGCCTCCTCTGTTTCGTCCTCTCTGCCTCGCCCAATCCAACCACGTCGGCAGCGACTTCAAATTCGTGCTCCACGACGCTCTCGATTCTTCTGGAGTCCTCACCTCTCACGCCAGAGATGCTAGGGAGGGATTCTGCTTGCAAATCGGCAAAATGTCTGATATAGAGAGGCAAACCAGCATTAGCATCAACCGCCGCGTTGATTTAGGGAAAACTGCTCTTTATATTGCAGCAGAGGATGACTCCCTCGTGTCGCATTCGTCAGTTCCGCTTCCAGTGGATGCTTTTATCAGTAGATTTGATGATCTTTCTATGGACTATTGTTCTCACTACAACTCTTCATTGAAATCGTCGCCCGAGAGGTTGTTGAAGAGTTTGGAAAATTATTTGTACATACACAAGGGATTCCGAAGAACCAACGCAAGGCATCTCTTAGAAACACGAGCTCTATATCTCCATTCGGTTTTGACACATCGTTCAGGATCAACTGCAATGCTATCACTTATATACTCAGAAATTCTGAAAATGCTTCGCTTATGGGGACTTTTGGATTTTGATGTGGAGATATTCTTTCCTCACGATCCTCATAGTCTTCCCAGAGGCTATCCCAAAAAGAAAAGCAAGGAATCTGATCATGCACACATAATGACATCACAAGCCCTTTTGGTTGAGATTCTAAGAAATTTGAAGGATGCTTTCTGGCCTTTTCAGCATGATCAATCAGGGAATTTATTCTTAAGGGCTGCACGGGCTGCTAACTTCATTGATGCATCAAATGTTGATGAAGACAGTGGCTTTCAGCTTGCATCTGCTAAGGCTGCTCAACATAGGCTAGATCGTGGTGTTTGGACCAGTGTTAATTTTGGGGATATGAGGCGTGCATTATCTGGTATGTGTTCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transglut_core2

Protein Analysis

342

Amino Acids

38.34

Weight (kDa)

8.74

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 143 - 219 4.2e-07 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 321
AciI CCGC 4 cut(s) 125, 316, 319, 392
AclWI GGATC 2 cut(s) 613, 698
AcsI RAATTY 6 cut(s) 83, 92, 185, 639, 805, 850
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 1 cut(s) 546
AflII CTTAAG 1 cut(s) 859
AgsI TTSAA 6 cut(s) 91, 184, 469, 493, 811, 1023
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 4 cut(s) 9, 20, 569, 925
AluI AGCT 4 cut(s) 9, 20, 569, 925
Alw21I GWGCWC 2 cut(s) 195, 571
AlwI GGATC 2 cut(s) 613, 698
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 2 cut(s) 41, 824
ApeKI GCWGC 6 cut(s) 6, 174, 353, 866, 875, 941
ApoI RAATTY 6 cut(s) 83, 92, 185, 639, 805, 850
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp700I GAANNNNTTC 1 cut(s) 854
AspS9I GGNCC 2 cut(s) 51, 972
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 2 cut(s) 51, 972
BanII GRGCYC 1 cut(s) 571
BauI CACGAG 2 cut(s) 371, 564
BbsI GAAGAC 2 cut(s) 707, 915
Bbv12I GWGCWC 2 cut(s) 195, 571
BbvI GCAGC 6 cut(s) 18, 186, 365, 853, 862, 928
BccI CCATC 1 cut(s) 105
BclI TGATCA 2 cut(s) 754, 838
BfaI CTAG 2 cut(s) 246, 956
BfrI CTTAAG 1 cut(s) 859
BisI GCNGC 7 cut(s) 7, 175, 319, 354, 867, 876, 942
BlsI GCNGC 7 cut(s) 8, 176, 320, 355, 868, 877, 943
Bme18I GGWCC 2 cut(s) 51, 972
BmeT110I CYCGRG 1 cut(s) 479
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 51, 972
BmsI GCATC 8 cut(s) 232, 318, 394, 559, 805, 880, 902, 938
BpiI GAAGAC 2 cut(s) 707, 915
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 936
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 546
Bse1I ACTGG 2 cut(s) 398, 975
Bse3DI GCAATG 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 4 cut(s) 97, 367, 409, 820
BseLI CCNNNNNNNGG 1 cut(s) 546
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 2 cut(s) 61, 648
BseNI ACTGG 2 cut(s) 398, 975
BseRI GAGGAG 5 cut(s) 58, 99, 102, 105, 120
BseXI GCAGC 6 cut(s) 18, 186, 365, 853, 862, 928
BseYI CCCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 852
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 43, 826
BsiHKAI GWGCWC 2 cut(s) 195, 571
BsiHKCI CYCGRG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 678
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 2 cut(s) 43, 826
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 195, 571
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 6 cut(s) 427, 605, 703, 754, 838, 958
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 4 cut(s) 125, 316, 319, 392
BspANI GGCC 2 cut(s) 43, 826
BspCNI CTCAG 2 cut(s) 60, 647
BspFNI CGCG 1 cut(s) 321
BspPI GGATC 2 cut(s) 613, 698
BspTI CTTAAG 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 2 cut(s) 398, 975
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 6 cut(s) 427, 605, 703, 754, 838, 958
BssSI CACGAG 2 cut(s) 371, 564
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 2 cut(s) 371, 564
Bst4CI ACNGT 1 cut(s) 914
Bst6I CTCTTC 4 cut(s) 61, 67, 466, 488
BstAFI CTTAAG 1 cut(s) 859
BstAPI GCANNNNNTGC 1 cut(s) 875
BstAUI TGTACA 1 cut(s) 513
BstC8I GCNNGC 3 cut(s) 263, 927, 1002
BstDEI CTNAG 5 cut(s) 47, 556, 634, 800, 936
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 4 cut(s) 97, 367, 409, 820
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 6 cut(s) 430, 608, 706, 757, 841, 961
BstMBI GATC 6 cut(s) 427, 605, 703, 754, 838, 958
BstMWI GCNNNNNNNGC 6 cut(s) 242, 315, 832, 872, 875, 941
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 6 cut(s) 18, 186, 365, 853, 862, 928
BstV2I GAAGAC 2 cut(s) 707, 915
BsuRI GGCC 2 cut(s) 43, 826
BtgI CCRYGG 1 cut(s) 38
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 97, 367, 409, 820
BtsIMutI CAGTG 3 cut(s) 405, 919, 982
Cac8I GCNNGC 3 cut(s) 263, 927, 1002
Cfr13I GGNCC 2 cut(s) 51, 972
CseI GACGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 514
CviAII CATG 4 cut(s) 39, 102, 758, 836
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 5 cut(s) 47, 556, 634, 800, 936
DpnI GATC 6 cut(s) 429, 607, 705, 756, 840, 960
DpnII GATC 6 cut(s) 427, 605, 703, 754, 838, 958
Eam1104I CTCTTC 4 cut(s) 61, 67, 466, 488
EarI CTCTTC 4 cut(s) 61, 67, 466, 488
EciI GGCGGA 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 571
Eco47I GGWCC 2 cut(s) 51, 972
Eco53kI GAGCTC 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 895
EcoT38I GRGCYC 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 4 cut(s) 42, 105, 761, 839
FaqI GGGAC 1 cut(s) 678
FatI CATG 4 cut(s) 38, 101, 757, 835
FbaI TGATCA 2 cut(s) 754, 838
Fnu4HI GCNGC 7 cut(s) 7, 175, 319, 354, 867, 876, 942
FokI GGATG 4 cut(s) 84, 374, 416, 827
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 7 cut(s) 7, 175, 319, 354, 867, 876, 942
FspBI CTAG 2 cut(s) 246, 956
GluI GCNGC 7 cut(s) 7, 175, 319, 354, 867, 876, 942
GsaI CCCAGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 2 cut(s) 43, 826
HgaI GACGC 1 cut(s) 209
Hin1II CATG 4 cut(s) 42, 105, 761, 839
HinfI GANTC 7 cut(s) 209, 219, 255, 365, 528, 749, 796
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 5 cut(s) 283, 533, 637, 645, 754
Hpy188III TCNNGA 5 cut(s) 49, 206, 216, 603, 701
Hpy99I CGWCG 3 cut(s) 173, 203, 478
HpyAV CCTTC 3 cut(s) 87, 129, 805
HpyCH4III ACNGT 1 cut(s) 914
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 8 cut(s) 265, 353, 614, 761, 869, 893, 929, 1004
HpyF10VI GCNNNNNNNGC 6 cut(s) 242, 315, 832, 872, 875, 941
HpyF3I CTNAG 5 cut(s) 47, 556, 634, 800, 936
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 4 cut(s) 42, 105, 761, 839
Ksp22I TGATCA 2 cut(s) 754, 838
Kzo9I GATC 6 cut(s) 427, 605, 703, 754, 838, 958
LmnI GCTCC 2 cut(s) 17, 198
Lsp1109I GCAGC 6 cut(s) 18, 186, 365, 853, 862, 928
LweI GCATC 8 cut(s) 232, 318, 394, 559, 805, 880, 902, 938
MaeI CTAG 2 cut(s) 246, 956
MaeII ACGT 1 cut(s) 168
MalI GATC 6 cut(s) 429, 607, 705, 756, 840, 960
MboI GATC 6 cut(s) 427, 605, 703, 754, 838, 958
MhlI GDGCHC 2 cut(s) 195, 571
MluCI AATT 8 cut(s) 83, 92, 185, 505, 639, 805, 850, 982
MlyI GAGTC 2 cut(s) 228, 359
MmeI TCCRAC 1 cut(s) 186
Mph1103I ATGCAT 1 cut(s) 895
MroXI GAANNNNTTC 1 cut(s) 854
MseI TTAA 2 cut(s) 860, 981
MspA1I CMGCKG 1 cut(s) 9
MspCI CTTAAG 1 cut(s) 859
Mva1269I GAATGC 1 cut(s) 379
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 6 cut(s) 242, 315, 832, 872, 875, 941
NcoI CCATGG 1 cut(s) 38
NdeII GATC 6 cut(s) 427, 605, 703, 754, 838, 958
NlaIII CATG 4 cut(s) 42, 105, 761, 839
NsiI ATGCAT 1 cut(s) 895
PcsI WCGNNNNNNNCGW 3 cut(s) 174, 195, 204
PctI GAATGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 854
PfeI GAWTC 5 cut(s) 209, 255, 528, 749, 796
PkrI GCNGC 7 cut(s) 8, 176, 320, 355, 868, 877, 943
PleI GAGTC 2 cut(s) 227, 359
PpsI GAGTC 2 cut(s) 227, 359
PpuMI RGGWCCY 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 571
Psp5II RGGWCCY 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 51, 972
PspPPI RGGWCCY 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SacI GAGCTC 1 cut(s) 571
SaqAI TTAA 2 cut(s) 860, 981
SatI GCNGC 7 cut(s) 7, 175, 319, 354, 867, 876, 942
Sau3AI GATC 6 cut(s) 427, 605, 703, 754, 838, 958
Sau96I GGNCC 2 cut(s) 51, 972
SchI GAGTC 2 cut(s) 228, 359
SduI GDGCHC 2 cut(s) 195, 571
SetI ASST 8 cut(s) 11, 22, 56, 171, 230, 488, 571, 927
SfaNI GCATC 8 cut(s) 232, 318, 394, 559, 805, 880, 902, 938
SinI GGWCC 2 cut(s) 51, 972
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
Sse9I AATT 8 cut(s) 83, 92, 185, 505, 639, 805, 850, 982
SsiI CCGC 4 cut(s) 125, 316, 319, 392
SspMI CTAG 2 cut(s) 246, 956
SstI GAGCTC 1 cut(s) 571
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 914
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 207
TasI AATT 8 cut(s) 83, 92, 185, 505, 639, 805, 850, 982
TatI WGTACW 1 cut(s) 513
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 5 cut(s) 209, 255, 528, 749, 796
Tru1I TTAA 2 cut(s) 860, 981
Tru9I TTAA 2 cut(s) 860, 981
TscAI CASTG 3 cut(s) 405, 919, 982
TseI GCWGC 6 cut(s) 6, 174, 353, 866, 875, 941
TspDTI ATGAA 3 cut(s) 453, 874, 921
TspRI CASTG 3 cut(s) 405, 919, 982
Vha464I CTTAAG 1 cut(s) 859
VpaK11BI GGWCC 2 cut(s) 51, 972
XapI RAATTY 6 cut(s) 83, 92, 185, 639, 805, 850
XmnI GAANNNNTTC 1 cut(s) 854
XspI CTAG 2 cut(s) 246, 956
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.