Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001850.1

Orthogroup ID

OG0009711

Physical Location & Seq

Genomic Coordinates Forward (+)

214197 .. 219210

Gene Structure 5014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001850.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgagtagctgggttggagcttcttcttctccttctccatggcctctcaggacctcttcttcttcctcttcctcctcctatccttccaaattcttcaaattccattcatgtcctcctcctccttctccgcctcctctgtttcgtcctctctgcctcgcccaatccaaccacgtcggcagcgacttcaaattcgtgctccacgacgctctcgattcttctggaatcctcacctctcacgccagagatgctagggagggattctgctcgcaaatcggcaaaatgtctgatatagagaggcaaaccagcattagcatcaaccgccgcgttgatttagggaaaactgctctttatattgcagcagaggatgactccctcgtgtcgcattcgtccgttccgcttccagtggatgcttttatcagtagatttgatgatctttctatggactattgttctcactacaactcttcattgaaatcatcgccggagaggttgttggagagtttggaaaattatttgtacatacacaagggattccgaagaaccaacgcaaggcatctcttagaaacacgagctctatatctccattcggttttgacacatcgttcaggatcaactgcaatgctatcactaatatactcagaaattctgaaaatgcttcgcttatggggacttttggattttgatgtggagatattctttcctcacgatcctcatagtcttcccagaggctatcccaaaaagaaaagcaaggaatctgatcatgcacacataatgacatcacaagcccttttggttgagattctaagcaatttgaaggatgctttctggccttttcagcatgatcaatcagggaatttattcttaagggctgcacgggctgctaacttcattgatgcatcaaatgttgatgaagacagtggctttcagcttgcatctgctaaggctgctcaacataggctagatcgtggtgtttggaccagtgttaattttggggatatgaggcgtgcattatctgcttgcgaacgtcttattctcctggaagctgattcaaaggaattgagagattatagcattcttctctaccattgtgggttttatgagcaatcacttgaatttttaaagttgtatcaggacacaaagagtcgcccacaacttagacgatcatctaattcatcaaccaatctagaggaagatgctgtagagaagttgatgatacgccttaaactaattttgatggaggatggttggagcaggccttcatatgtaagaaactttcttggtaacagctctgatccatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transglut_core2

Protein Analysis

433

Amino Acids

49.05

Weight (kDa)

7.0

Isoelectric Point (pI)

59.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009711)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g03070
malus_domestica	MD02G1286000.v1.1 MD02G1286500.v1.1 MD02G1286600.v1.1 MD02G1287000.v1.1 MD11G1310600.v1.1 MD14G1215400.v1.1
prunus_persica	Prupe.2G036300_v2.0.a1 Prupe.2G036300_v2.0.a1
pyrus_communis	pycom02g24330
rosa_chinensis	RchiOBHm_Chr1g0324301
rosa_laevigata	RLG00000030205
rosa_multiflora	Rmu_sc0001850.1_g000055 Rmu_sc0004082.1_g000025
rosa_roxburghii	Rroxscaffold_159G00432680 Rroxscaffold_4G00325710
rosa_rugosa	Rorug01G0044900
rosa_samantha	Rh1AG060800 Rh1BG052000 Rh1CG063100 Rh1DG067500
rosa_wichuraiana	Rw1G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	324
AciI	CCGC	4 cut(s)	128, 319, 322, 395
AclWI	GGATC	3 cut(s)	616, 701, 1286
AcsI	RAATTY	6 cut(s)	89, 98, 188, 642, 853, 1112
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	549
AflII	CTTAAG	1 cut(s)	862
AgsI	TTSAA	6 cut(s)	97, 187, 472, 814, 1050, 1112
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	1035
AluBI	AGCT	6 cut(s)	9, 20, 572, 928, 1043, 1287
AluI	AGCT	6 cut(s)	9, 20, 572, 928, 1043, 1287
Alw21I	GWGCWC	2 cut(s)	198, 574
AlwI	GGATC	3 cut(s)	616, 701, 1286
AoxI	GGCC	3 cut(s)	41, 827, 1253
ApeKI	GCWGC	5 cut(s)	177, 356, 869, 878, 944
ApoI	RAATTY	6 cut(s)	89, 98, 188, 642, 853, 1112
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
Asp700I	GAANNNNTTC	1 cut(s)	857
AspS9I	GGNCC	2 cut(s)	51, 975
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	51, 975
BanII	GRGCYC	1 cut(s)	574
BauI	CACGAG	2 cut(s)	374, 567
BbsI	GAAGAC	2 cut(s)	710, 918
Bbv12I	GWGCWC	2 cut(s)	198, 574
BbvI	GCAGC	5 cut(s)	189, 368, 856, 865, 931
BccI	CCATC	2 cut(s)	1228, 1235
BciT130I	CCWGG	1 cut(s)	1037
BclI	TGATCA	2 cut(s)	757, 841
BfaI	CTAG	3 cut(s)	249, 959, 1184
BfmI	CTRYAG	1 cut(s)	1197
BfrI	CTTAAG	1 cut(s)	862
BisI	GCNGC	6 cut(s)	178, 322, 357, 870, 879, 945
BlsI	GCNGC	6 cut(s)	179, 323, 358, 871, 880, 946
Bme1390I	CCNGG	1 cut(s)	1037
Bme18I	GGWCC	2 cut(s)	51, 975
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	51, 975
BmrFI	CCNGG	1 cut(s)	1037
BmsI	GCATC	9 cut(s)	235, 321, 397, 562, 808, 883, 905, 941, 1183
BpiI	GAAGAC	2 cut(s)	710, 918
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
Bpu10I	CCTNAGC	1 cut(s)	939
BsaJI	CCNNGG	2 cut(s)	38, 1295
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	2 cut(s)	401, 978
Bse3DI	GCAATG	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	1037
BseDI	CCNNGG	2 cut(s)	38, 1295
BseGI	GGATG	4 cut(s)	370, 412, 823, 1246
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	61, 651
BseNI	ACTGG	2 cut(s)	401, 978
BseRI	GAGGAG	4 cut(s)	64, 105, 108, 123
BseXI	GCAGC	5 cut(s)	189, 368, 856, 865, 931
BseYI	CCCAGC	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	43, 829, 1255
BsiHKAI	GWGCWC	2 cut(s)	198, 574
BsiSI	CCGG	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	681
BsmI	GAATGC	2 cut(s)	382, 1071
BsnI	GGCC	3 cut(s)	43, 829, 1255
Bsp1286I	GDGCHC	2 cut(s)	198, 574
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	8 cut(s)	430, 608, 706, 757, 841, 961, 1160, 1291
Bsp19I	CCATGG	2 cut(s)	38, 1295
BspACI	CCGC	4 cut(s)	128, 319, 322, 395
BspANI	GGCC	3 cut(s)	43, 829, 1255
BspCNI	CTCAG	2 cut(s)	60, 650
BspFNI	CGCG	1 cut(s)	324
BspPI	GGATC	3 cut(s)	616, 701, 1286
BspTI	CTTAAG	1 cut(s)	862
BsrDI	GCAATG	1 cut(s)	624
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	401, 978
BssECI	CCNNGG	2 cut(s)	38, 1295
BssMI	GATC	8 cut(s)	430, 608, 706, 757, 841, 961, 1160, 1291
BssSI	CACGAG	2 cut(s)	374, 567
BssT1I	CCWWGG	2 cut(s)	38, 1295
Bst2BI	CACGAG	2 cut(s)	374, 567
Bst2UI	CCWGG	1 cut(s)	1037
Bst4CI	ACNGT	1 cut(s)	917
Bst6I	CTCTTC	3 cut(s)	61, 73, 469
BstAFI	CTTAAG	1 cut(s)	862
BstAPI	GCANNNNNTGC	2 cut(s)	878, 1013
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	5 cut(s)	266, 930, 1005, 1018, 1253
BstDEI	CTNAG	6 cut(s)	47, 559, 637, 803, 939, 1154
BstDSI	CCRYGG	2 cut(s)	38, 1295
BstF5I	GGATG	4 cut(s)	370, 412, 823, 1246
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	8 cut(s)	433, 611, 709, 760, 844, 964, 1163, 1294
BstMBI	GATC	8 cut(s)	430, 608, 706, 757, 841, 961, 1160, 1291
BstMWI	GCNNNNNNNGC	7 cut(s)	245, 318, 835, 875, 878, 944, 1013
BstNI	CCWGG	1 cut(s)	1037
BstSCI	CCNGG	1 cut(s)	1035
BstSFI	CTRYAG	1 cut(s)	1197
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	5 cut(s)	189, 368, 856, 865, 931
BstV2I	GAAGAC	2 cut(s)	710, 918
BsuRI	GGCC	3 cut(s)	43, 829, 1255
BtgI	CCRYGG	2 cut(s)	38, 1295
BtgZI	GCGATG	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	370, 412, 823, 1246
BtsIMutI	CAGTG	3 cut(s)	408, 922, 985
Cac8I	GCNNGC	5 cut(s)	266, 930, 1005, 1018, 1253
Cfr13I	GGNCC	2 cut(s)	51, 975
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	5 cut(s)	39, 108, 761, 839, 1296
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	6 cut(s)	47, 559, 637, 803, 939, 1154
DpnI	GATC	8 cut(s)	432, 610, 708, 759, 843, 963, 1162, 1293
DpnII	GATC	8 cut(s)	430, 608, 706, 757, 841, 961, 1160, 1291
DraI	TTTAAA	1 cut(s)	1119
Eam1104I	CTCTTC	3 cut(s)	61, 73, 469
EarI	CTCTTC	3 cut(s)	61, 73, 469
EciI	GGCGGA	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	572
Eco130I	CCWWGG	2 cut(s)	38, 1295
Eco147I	AGGCCT	1 cut(s)	1255
Eco24I	GRGCYC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	51, 975
Eco53kI	GAGCTC	1 cut(s)	572
EcoICRI	GAGCTC	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	1035
EcoT14I	CCWWGG	2 cut(s)	38, 1295
EcoT22I	ATGCAT	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	574
ErhI	CCWWGG	2 cut(s)	38, 1295
FaeI	CATG	5 cut(s)	42, 111, 764, 842, 1299
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	5 cut(s)	38, 107, 760, 838, 1295
FauNDI	CATATG	1 cut(s)	1261
FbaI	TGATCA	2 cut(s)	757, 841
Fnu4HI	GCNGC	6 cut(s)	178, 322, 357, 870, 879, 945
FokI	GGATG	4 cut(s)	377, 419, 830, 1253
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	6 cut(s)	178, 322, 357, 870, 879, 945
FspBI	CTAG	3 cut(s)	249, 959, 1184
GluI	GCNGC	6 cut(s)	178, 322, 357, 870, 879, 945
GsaI	CCCAGC	1 cut(s)	13
HaeIII	GGCC	3 cut(s)	43, 829, 1255
HapII	CCGG	1 cut(s)	482
HgaI	GACGC	1 cut(s)	212
Hin1II	CATG	5 cut(s)	42, 111, 764, 842, 1299
HinfI	GANTC	9 cut(s)	212, 222, 258, 368, 531, 752, 799, 1046, 1141
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	6 cut(s)	286, 536, 640, 648, 757, 1291
Hpy188III	TCNNGA	7 cut(s)	49, 209, 219, 606, 704, 1130, 1184
Hpy99I	CGWCG	2 cut(s)	176, 206
HpyAV	CCTTC	5 cut(s)	42, 93, 132, 808, 1266
HpyCH4III	ACNGT	1 cut(s)	917
HpyCH4IV	ACGT	2 cut(s)	171, 1024
HpyCH4V	TGCA	7 cut(s)	356, 617, 764, 872, 896, 932, 1007
HpyF10VI	GCNNNNNNNGC	7 cut(s)	245, 318, 835, 875, 878, 944, 1013
HpyF3I	CTNAG	6 cut(s)	47, 559, 637, 803, 939, 1154
HpySE526I	ACGT	2 cut(s)	171, 1024
Hsp92II	CATG	5 cut(s)	42, 111, 764, 842, 1299
Ksp22I	TGATCA	2 cut(s)	757, 841
Kzo9I	GATC	8 cut(s)	430, 608, 706, 757, 841, 961, 1160, 1291
LmnI	GCTCC	3 cut(s)	17, 201, 1248
Lsp1109I	GCAGC	5 cut(s)	189, 368, 856, 865, 931
LweI	GCATC	9 cut(s)	235, 321, 397, 562, 808, 883, 905, 941, 1183
MaeI	CTAG	3 cut(s)	249, 959, 1184
MaeII	ACGT	2 cut(s)	171, 1024
MaeIII	GTNAC	1 cut(s)	1280
MalI	GATC	8 cut(s)	432, 610, 708, 759, 843, 963, 1162, 1293
MboI	GATC	8 cut(s)	430, 608, 706, 757, 841, 961, 1160, 1291
MhlI	GDGCHC	2 cut(s)	198, 574
MlyI	GAGTC	2 cut(s)	362, 1150
MmeI	TCCRAC	3 cut(s)	189, 474, 1226
Mph1103I	ATGCAT	1 cut(s)	898
MroXI	GAANNNNTTC	1 cut(s)	857
MseI	TTAA	4 cut(s)	863, 984, 1118, 1221
MspCI	CTTAAG	1 cut(s)	862
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	1 cut(s)	1037
Mva1269I	GAATGC	2 cut(s)	382, 1071
MvaI	CCWGG	1 cut(s)	1037
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	7 cut(s)	245, 318, 835, 875, 878, 944, 1013
NcoI	CCATGG	2 cut(s)	38, 1295
NdeI	CATATG	1 cut(s)	1261
NdeII	GATC	8 cut(s)	430, 608, 706, 757, 841, 961, 1160, 1291
NlaIII	CATG	5 cut(s)	42, 111, 764, 842, 1299
NsiI	ATGCAT	1 cut(s)	898
PceI	AGGCCT	1 cut(s)	1255
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 198, 207
PctI	GAATGC	2 cut(s)	382, 1071
PdmI	GAANNNNTTC	1 cut(s)	857
PfeI	GAWTC	7 cut(s)	212, 222, 258, 531, 752, 799, 1046
PfoI	TCCNGGA	1 cut(s)	1035
PkrI	GCNGC	6 cut(s)	179, 323, 358, 871, 880, 946
PleI	GAGTC	2 cut(s)	362, 1149
PpsI	GAGTC	2 cut(s)	362, 1149
PpuMI	RGGWCCY	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	1035
PspFI	CCCAGC	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	1035
PspPI	GGNCC	2 cut(s)	51, 975
PspPPI	RGGWCCY	1 cut(s)	51
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SacI	GAGCTC	1 cut(s)	574
SaqAI	TTAA	4 cut(s)	863, 984, 1118, 1221
SatI	GCNGC	6 cut(s)	178, 322, 357, 870, 879, 945
Sau3AI	GATC	8 cut(s)	430, 608, 706, 757, 841, 961, 1160, 1291
Sau96I	GGNCC	2 cut(s)	51, 975
SchI	GAGTC	2 cut(s)	362, 1150
ScrFI	CCNGG	1 cut(s)	1037
SduI	GDGCHC	2 cut(s)	198, 574
SfaNI	GCATC	9 cut(s)	235, 321, 397, 562, 808, 883, 905, 941, 1183
SfcI	CTRYAG	1 cut(s)	1197
SinI	GGWCC	2 cut(s)	51, 975
SmlI	CTYRAG	1 cut(s)	862
SmoI	CTYRAG	1 cut(s)	862
SseBI	AGGCCT	1 cut(s)	1255
SsiI	CCGC	4 cut(s)	128, 319, 322, 395
SspMI	CTAG	3 cut(s)	249, 959, 1184
SstI	GAGCTC	1 cut(s)	574
StuI	AGGCCT	1 cut(s)	1255
StyD4I	CCNGG	1 cut(s)	1035
StyI	CCWWGG	2 cut(s)	38, 1295
TaaI	ACNGT	1 cut(s)	917
TaiI	ACGT	2 cut(s)	174, 1027
TaqI	TCGA	1 cut(s)	210
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	7 cut(s)	212, 222, 258, 531, 752, 799, 1046
Tru1I	TTAA	4 cut(s)	863, 984, 1118, 1221
Tru9I	TTAA	4 cut(s)	863, 984, 1118, 1221
TscAI	CASTG	3 cut(s)	408, 922, 985
TseI	GCWGC	5 cut(s)	177, 356, 869, 878, 944
TspDTI	ATGAA	6 cut(s)	96, 456, 877, 924, 1161, 1248
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	3 cut(s)	408, 922, 985
Vha464I	CTTAAG	1 cut(s)	862
VpaK11BI	GGWCC	2 cut(s)	51, 975
XapI	RAATTY	6 cut(s)	89, 98, 188, 642, 853, 1112
XbaI	TCTAGA	1 cut(s)	1183
XmnI	GAANNNNTTC	1 cut(s)	857
XspI	CTAG	3 cut(s)	249, 959, 1184
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.