Rroxscaffold_159G00432680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0009711
Physical Location & Seq
Forward (+)
260122 .. 265507
5386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432680.1

Sequence Viewer

Length: 1383 bp
ATGAGCAGCTGGGTTGGAGCTTCTTCTTCTTCTTCTCCATGGCCTCTCAGGACCTCTTCCTCTTCCTCTTCCTCCTCCTATCCTTCCAGATTCTTCAAATTCCATTCATGTCCTCCTCCTTCTCCACCTCCTCCTCCTCCGTTTCGTCCTCTCTGCCTCGCCCAATCCAACCACGTCGGCAGCGACTTCAAATTCGTGCTCCACGACGCTCTCGATTCTTCTGGAATCCTCACCTCTCACGCCAGAGATGCTAGGGAGGGATTCTGCTTGCAAATCGGCAAAATGTCTGACATAGAGAGGCAAACCAGCATTAGCATCAACCGCCGCGTTGATTTAGGGAAAACTGCTCTTTATATTGCAGCAGAGGATGACTCCCTCGTGTCGCATTCGTCCGTTCCGCTTCCAGTGGATGCTTTTATCAGTAGATTTGATGATCTTTCTATGGACTATTGTTCTCACTACAACTCTTCATTGAAATCGTCGCCTGAGAGGTTGTTGGAGAGTTTGGAAAATTATTTGTACATACACAAGGGATTCCGAAGAACCAATGCAAGGCATCTCTTCGAAACACGAGCTTTATATCTCCATTCGGTCTGGAAATCTGCGTTACGGCCTTTTTTCTATGTTATGTCAAGCTTGTTTATGAGAGCACTACAAATGGGTACTGTTGTTTTGACACATCGTTCAGGATCAACTGCAATGCTATCACTAATATACTCAGAAATTCTGAAAATGCTTCGCTTATGGGGACTTTTGGATTTTGATGTGGAGATATTCTTTCCTCACGATCCTCATAGTCTTCCTAGAGGCTATCCCAAAAAGAAAAGCAAGGAATCTGATCATGCACACATAATGACATCACAAGCCCTTTTGGTTGAGATTCTAAGAAATTTGAAGGATGCTTTCTGGCCTTTTCAGCATGATCAATCAGGGAATTTATTCTTAAGGGCTGCACGGGCTGCTAACTTCATTGATGCATCAAATGCTGATGAAGACAGTGGCTTTCAGCTTGCATCTGCTAAGGCTGCTCAACATAGGCTAGATCGTGGTGTTTGGACCAGTGTTAATTTTGGGGATATGAGGCGTGCATTATCTGCTTGCGAACGTCTTATTCTCCTCGAAGCTGATTCAAAGGAATTGAGAGATTATAGCATTCTTCTCTACCATTGTGGATTTTATGAGCAATCACTTGAATTTTTAAAGTTGTATCAGGACACAAAGACTCGCCCACAACTTAGACGATCATCTAATTCATCAACCAATCTAGAGGAAGATGCTGTACAGAAGTTAATGATACGCCTTAAACTAATTTTGATGGAGGATGGTTGGAGCAGGCCTTCATATGTAAGAAACTTTCTTGGTAACAGCTCTGATCCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transglut_core2

Protein Analysis

460

Amino Acids

52.31

Weight (kDa)

8.61

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 327
AciI CCGC 3 cut(s) 322, 325, 398
AclWI GGATC 3 cut(s) 697, 782, 1367
AcsI RAATTY 6 cut(s) 98, 191, 723, 889, 934, 1193
AfaI GTAC 3 cut(s) 521, 664, 1281
AfiI CCNNNNNNNGG 1 cut(s) 552
AflII CTTAAG 1 cut(s) 943
AgsI TTSAA 6 cut(s) 97, 190, 475, 895, 1131, 1193
AjiI CACGTC 1 cut(s) 175
AluBI AGCT 7 cut(s) 9, 20, 575, 636, 1009, 1124, 1368
AluI AGCT 7 cut(s) 9, 20, 575, 636, 1009, 1124, 1368
Alw21I GWGCWC 2 cut(s) 201, 652
AlwI GGATC 3 cut(s) 697, 782, 1367
AoxI GGCC 4 cut(s) 41, 611, 908, 1334
ApeKI GCWGC 6 cut(s) 6, 180, 359, 950, 959, 1025
ApoI RAATTY 6 cut(s) 98, 191, 723, 889, 934, 1193
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
Asp700I GAANNNNTTC 1 cut(s) 938
AspS9I GGNCC 2 cut(s) 51, 1056
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 1 cut(s) 564
AvaII GGWCC 2 cut(s) 51, 1056
BaeI ACNNNNGTAYC 2 cut(s) 654, 687
BarI GAAGNNNNNNTAC 2 cut(s) 1263, 1295
BauI CACGAG 2 cut(s) 377, 570
BbsI GAAGAC 2 cut(s) 791, 999
Bbv12I GWGCWC 2 cut(s) 201, 652
BbvI GCAGC 6 cut(s) 18, 192, 371, 937, 946, 1012
BccI CCATC 2 cut(s) 1309, 1316
BceAI ACGGC 1 cut(s) 626
BclI TGATCA 2 cut(s) 838, 922
BfaI CTAG 4 cut(s) 252, 804, 1040, 1265
BfrI CTTAAG 1 cut(s) 943
BisI GCNGC 7 cut(s) 7, 181, 325, 360, 951, 960, 1026
BlsI GCNGC 7 cut(s) 8, 182, 326, 361, 952, 961, 1027
Bme18I GGWCC 2 cut(s) 51, 1056
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 51, 1056
BmsI GCATC 9 cut(s) 238, 324, 400, 565, 889, 964, 986, 1022, 1264
BpiI GAAGAC 2 cut(s) 791, 999
BplI GAGNNNNNCTC 2 cut(s) 356, 388
Bpu10I CCTNAGC 1 cut(s) 1020
Bpu14I TTCGAA 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 38, 1376
Bsc4I CCNNNNNNNGG 1 cut(s) 552
Bse1I ACTGG 2 cut(s) 404, 1059
Bse3DI GCAATG 1 cut(s) 705
BseDI CCNNGG 2 cut(s) 38, 1376
BseGI GGATG 4 cut(s) 373, 415, 904, 1327
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 3 cut(s) 61, 477, 732
BseNI ACTGG 2 cut(s) 404, 1059
BseRI GAGGAG 6 cut(s) 64, 105, 120, 123, 126, 1106
BseXI GCAGC 6 cut(s) 18, 192, 371, 937, 946, 1012
BseYI CCCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 4 cut(s) 43, 613, 910, 1336
BsiHKAI GWGCWC 2 cut(s) 201, 652
BslFI GGGAC 1 cut(s) 762
BslI CCNNNNNNNGG 1 cut(s) 552
BsmFI GGGAC 1 cut(s) 762
BsmI GAATGC 2 cut(s) 385, 1152
BsnI GGCC 4 cut(s) 43, 613, 910, 1336
Bsp119I TTCGAA 1 cut(s) 564
Bsp1286I GDGCHC 2 cut(s) 201, 652
Bsp1407I TGTACA 2 cut(s) 519, 1279
Bsp143I GATC 8 cut(s) 433, 689, 787, 838, 922, 1042, 1241, 1372
Bsp19I CCATGG 2 cut(s) 38, 1376
BspACI CCGC 3 cut(s) 322, 325, 398
BspANI GGCC 4 cut(s) 43, 613, 910, 1336
BspCNI CTCAG 3 cut(s) 60, 478, 731
BspFNI CGCG 1 cut(s) 327
BspPI GGATC 3 cut(s) 697, 782, 1367
BspT104I TTCGAA 1 cut(s) 564
BspTI CTTAAG 1 cut(s) 943
BsrDI GCAATG 1 cut(s) 705
BsrGI TGTACA 2 cut(s) 519, 1279
BsrI ACTGG 2 cut(s) 404, 1059
BssECI CCNNGG 2 cut(s) 38, 1376
BssMI GATC 8 cut(s) 433, 689, 787, 838, 922, 1042, 1241, 1372
BssSI CACGAG 2 cut(s) 377, 570
BssT1I CCWWGG 2 cut(s) 38, 1376
Bst2BI CACGAG 2 cut(s) 377, 570
Bst4CI ACNGT 2 cut(s) 667, 998
Bst6I CTCTTC 5 cut(s) 61, 67, 73, 472, 566
BstAFI CTTAAG 1 cut(s) 943
BstAPI GCANNNNNTGC 3 cut(s) 959, 983, 1094
BstAUI TGTACA 2 cut(s) 519, 1279
BstBI TTCGAA 1 cut(s) 564
BstC8I GCNNGC 5 cut(s) 269, 1011, 1086, 1099, 1334
BstDEI CTNAG 6 cut(s) 47, 486, 718, 884, 1020, 1235
BstDSI CCRYGG 2 cut(s) 38, 1376
BstF5I GGATG 4 cut(s) 373, 415, 904, 1327
BstFNI CGCG 1 cut(s) 327
BstKTI GATC 8 cut(s) 436, 692, 790, 841, 925, 1045, 1244, 1375
BstMBI GATC 8 cut(s) 433, 689, 787, 838, 922, 1042, 1241, 1372
BstMWI GCNNNNNNNGC 8 cut(s) 248, 321, 916, 956, 959, 983, 1025, 1094
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 6 cut(s) 18, 192, 371, 937, 946, 1012
BstV2I GAAGAC 2 cut(s) 791, 999
BsuRI GGCC 4 cut(s) 43, 613, 910, 1336
BtgI CCRYGG 2 cut(s) 38, 1376
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 4 cut(s) 373, 415, 904, 1327
BtsIMutI CAGTG 3 cut(s) 411, 1003, 1066
Cac8I GCNNGC 5 cut(s) 269, 1011, 1086, 1099, 1334
Cfr13I GGNCC 2 cut(s) 51, 1056
CseI GACGC 1 cut(s) 215
Csp6I GTAC 3 cut(s) 520, 663, 1280
CviAII CATG 5 cut(s) 39, 108, 842, 920, 1377
CviQI GTAC 3 cut(s) 520, 663, 1280
DdeI CTNAG 6 cut(s) 47, 486, 718, 884, 1020, 1235
DpnI GATC 8 cut(s) 435, 691, 789, 840, 924, 1044, 1243, 1374
DpnII GATC 8 cut(s) 433, 689, 787, 838, 922, 1042, 1241, 1372
DraI TTTAAA 1 cut(s) 1200
Eam1104I CTCTTC 5 cut(s) 61, 67, 73, 472, 566
EarI CTCTTC 5 cut(s) 61, 67, 73, 472, 566
Eco130I CCWWGG 2 cut(s) 38, 1376
Eco147I AGGCCT 1 cut(s) 1336
Eco47I GGWCC 2 cut(s) 51, 1056
EcoO109I RGGNCCY 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 38, 1376
EcoT22I ATGCAT 1 cut(s) 979
ErhI CCWWGG 2 cut(s) 38, 1376
FaeI CATG 5 cut(s) 42, 111, 845, 923, 1380
FaqI GGGAC 1 cut(s) 762
FatI CATG 5 cut(s) 38, 107, 841, 919, 1376
FauNDI CATATG 1 cut(s) 1342
FbaI TGATCA 2 cut(s) 838, 922
Fnu4HI GCNGC 7 cut(s) 7, 181, 325, 360, 951, 960, 1026
FokI GGATG 4 cut(s) 380, 422, 911, 1334
Fsp4HI GCNGC 7 cut(s) 7, 181, 325, 360, 951, 960, 1026
FspBI CTAG 4 cut(s) 252, 804, 1040, 1265
GluI GCNGC 7 cut(s) 7, 181, 325, 360, 951, 960, 1026
GsaI CCCAGC 1 cut(s) 13
HaeIII GGCC 4 cut(s) 43, 613, 910, 1336
HgaI GACGC 1 cut(s) 215
Hin1II CATG 5 cut(s) 42, 111, 845, 923, 1380
HindIII AAGCTT 1 cut(s) 634
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 6 cut(s) 289, 539, 721, 729, 838, 1372
Hpy188III TCNNGA 9 cut(s) 49, 87, 212, 222, 595, 687, 785, 1211, 1265
Hpy99I CGWCG 3 cut(s) 179, 209, 484
HpyAV CCTTC 4 cut(s) 93, 129, 889, 1347
HpyCH4III ACNGT 2 cut(s) 667, 998
HpyCH4IV ACGT 2 cut(s) 174, 1105
HpyCH4V TGCA 9 cut(s) 271, 359, 551, 698, 845, 953, 977, 1013, 1088
HpyF10VI GCNNNNNNNGC 8 cut(s) 248, 321, 916, 956, 959, 983, 1025, 1094
HpyF3I CTNAG 6 cut(s) 47, 486, 718, 884, 1020, 1235
HpySE526I ACGT 2 cut(s) 174, 1105
Hsp92II CATG 5 cut(s) 42, 111, 845, 923, 1380
Ksp22I TGATCA 2 cut(s) 838, 922
Kzo9I GATC 8 cut(s) 433, 689, 787, 838, 922, 1042, 1241, 1372
LmnI GCTCC 3 cut(s) 17, 204, 1329
Lsp1109I GCAGC 6 cut(s) 18, 192, 371, 937, 946, 1012
LweI GCATC 9 cut(s) 238, 324, 400, 565, 889, 964, 986, 1022, 1264
MaeI CTAG 4 cut(s) 252, 804, 1040, 1265
MaeII ACGT 2 cut(s) 174, 1105
MaeIII GTNAC 2 cut(s) 606, 1361
MalI GATC 8 cut(s) 435, 691, 789, 840, 924, 1044, 1243, 1374
MboI GATC 8 cut(s) 433, 689, 787, 838, 922, 1042, 1241, 1372
MhlI GDGCHC 2 cut(s) 201, 652
MlyI GAGTC 2 cut(s) 365, 1216
MmeI TCCRAC 3 cut(s) 192, 477, 1307
Mph1103I ATGCAT 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 5 cut(s) 944, 1065, 1199, 1289, 1302
MspA1I CMGCKG 1 cut(s) 9
MspCI CTTAAG 1 cut(s) 943
Mva1269I GAATGC 2 cut(s) 385, 1152
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 8 cut(s) 248, 321, 916, 956, 959, 983, 1025, 1094
NcoI CCATGG 2 cut(s) 38, 1376
NdeI CATATG 1 cut(s) 1342
NdeII GATC 8 cut(s) 433, 689, 787, 838, 922, 1042, 1241, 1372
NlaIII CATG 5 cut(s) 42, 111, 845, 923, 1380
NsiI ATGCAT 1 cut(s) 979
NspV TTCGAA 1 cut(s) 564
PceI AGGCCT 1 cut(s) 1336
PcsI WCGNNNNNNNCGW 3 cut(s) 180, 201, 210
PctI GAATGC 2 cut(s) 385, 1152
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 8 cut(s) 90, 215, 225, 261, 534, 833, 880, 1127
PkrI GCNGC 7 cut(s) 8, 182, 326, 361, 952, 961, 1027
PleI GAGTC 2 cut(s) 365, 1216
PpsI GAGTC 2 cut(s) 365, 1216
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 51, 1056
PspPPI RGGWCCY 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 3 cut(s) 521, 664, 1281
RsaNI GTAC 3 cut(s) 520, 663, 1280
SaqAI TTAA 5 cut(s) 944, 1065, 1199, 1289, 1302
SatI GCNGC 7 cut(s) 7, 181, 325, 360, 951, 960, 1026
Sau3AI GATC 8 cut(s) 433, 689, 787, 838, 922, 1042, 1241, 1372
Sau96I GGNCC 2 cut(s) 51, 1056
SchI GAGTC 2 cut(s) 365, 1216
SduI GDGCHC 2 cut(s) 201, 652
SfaNI GCATC 9 cut(s) 238, 324, 400, 565, 889, 964, 986, 1022, 1264
SfuI TTCGAA 1 cut(s) 564
SinI GGWCC 2 cut(s) 51, 1056
SmlI CTYRAG 1 cut(s) 943
SmoI CTYRAG 1 cut(s) 943
SseBI AGGCCT 1 cut(s) 1336
SsiI CCGC 3 cut(s) 322, 325, 398
SspMI CTAG 4 cut(s) 252, 804, 1040, 1265
StuI AGGCCT 1 cut(s) 1336
StyI CCWWGG 2 cut(s) 38, 1376
TaaI ACNGT 2 cut(s) 667, 998
TaiI ACGT 2 cut(s) 177, 1108
TaqI TCGA 3 cut(s) 213, 564, 1119
TaqII GACCGA 1 cut(s) 580
TatI WGTACW 2 cut(s) 519, 1279
TauI GCSGC 1 cut(s) 327
TfiI GAWTC 8 cut(s) 90, 215, 225, 261, 534, 833, 880, 1127
Tru1I TTAA 5 cut(s) 944, 1065, 1199, 1289, 1302
Tru9I TTAA 5 cut(s) 944, 1065, 1199, 1289, 1302
TscAI CASTG 3 cut(s) 411, 1003, 1066
TseI GCWGC 6 cut(s) 6, 180, 359, 950, 959, 1025
TspDTI ATGAA 6 cut(s) 96, 459, 958, 1005, 1242, 1329
TspGWI ACGGA 2 cut(s) 129, 382
TspRI CASTG 3 cut(s) 411, 1003, 1066
Vha464I CTTAAG 1 cut(s) 943
VpaK11BI GGWCC 2 cut(s) 51, 1056
XapI RAATTY 6 cut(s) 98, 191, 723, 889, 934, 1193
XbaI TCTAGA 1 cut(s) 1264
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 4 cut(s) 252, 804, 1040, 1265
Zsp2I ATGCAT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.