Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004082.1

Orthogroup ID

OG0009711

Physical Location & Seq

Genomic Coordinates Reverse (-)

108254 .. 113249

Gene Structure 4996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004082.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atgagcagctgggttggagcttcttcttctccttctccatggcctctcaggacctcttcctcctcctatccttccaaattcttcaaattccattcatgtcctcctcctccttctccgcctcctctgtttcgtcctctctgcctcgcccaatccaaccacgtcggcagcgacctcaaattcgtgctccacgacgctctcgactcttctggaatcctcccctctcacgccagagatgctagggagggattctgctcgcaaatcggcaaaatgtctgatatagagaggcaaaccagcattagcatcaaccgccgcgttgatttagggaaaactgctctttatattgcagcagaggatgactccctcgtgtcgcattcgtccgttccgcttccagtggatgcttttatcagtagatttgatgatctttctatggactattgttctcactacaactcttcattgaaatcgtcgccggagaggttgttggagagtttggaaaattatttgtacatacacaagggattccgaagaaccaacgcaaggcatctcttagaaacacgagctctatatctccattcggttttgacacatcgttcaggatcaactgcaatgctatcactaatatactcagaaattctgaaaatgcttcgcttatggggacttttggattttgatgtggagatattctttcctcacgatcctcatagtcttcccagaggctatcccaaaaagaaaagcaaggaatctgatcatgcacacataatgacatcacaagcccttttggttgagattctaagcaatttgaaggatgctttctggccttttcagcatgatcaatcagggaatttattcttaagggctgcacgggctgctaacttcattgatgcatcaaatgttgatgaagacagtggctttcagcttgcatctgctaaggctgctcaacataggctagatcgtggtgtttggaccagtgttaattttggggatatgaggcgtgcattatctgcttgcgaacgtcttattctcctcgaagctgattcaaaggaattgagagattatagcattcttctctaccattgtgggttttatgagcaatcacttgaatttttaaagttgtatcaggacacaaagagtcgcccacaacttagacgatcatctaattcatcaaccaatctagaggaagatgctgtagagaagttgatgatacgccttaaactaattttgatggaggatggttggagcaggccttcatatgtaagaaactttcttggtaacagctctgatccatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transglut_core2

Protein Analysis

429

Amino Acids

48.67

Weight (kDa)

7.0

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009711)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g03070
malus_domestica	MD02G1286000.v1.1 MD02G1286500.v1.1 MD02G1286600.v1.1 MD02G1287000.v1.1 MD11G1310600.v1.1 MD14G1215400.v1.1
prunus_persica	Prupe.2G036300_v2.0.a1 Prupe.2G036300_v2.0.a1
pyrus_communis	pycom02g24330
rosa_chinensis	RchiOBHm_Chr1g0324301
rosa_laevigata	RLG00000030205
rosa_multiflora	Rmu_sc0001850.1_g000055 Rmu_sc0004082.1_g000025
rosa_roxburghii	Rroxscaffold_159G00432680 Rroxscaffold_4G00325710
rosa_rugosa	Rorug01G0044900
rosa_samantha	Rh1AG060800 Rh1BG052000 Rh1CG063100 Rh1DG067500
rosa_wichuraiana	Rw1G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	312
AciI	CCGC	4 cut(s)	116, 307, 310, 383
AclWI	GGATC	3 cut(s)	604, 689, 1274
AcsI	RAATTY	6 cut(s)	77, 86, 176, 630, 841, 1100
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	537
AflII	CTTAAG	1 cut(s)	850
AgsI	TTSAA	5 cut(s)	85, 460, 802, 1038, 1100
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	6 cut(s)	9, 20, 560, 916, 1031, 1275
AluI	AGCT	6 cut(s)	9, 20, 560, 916, 1031, 1275
Alw21I	GWGCWC	2 cut(s)	186, 562
AlwI	GGATC	3 cut(s)	604, 689, 1274
AoxI	GGCC	3 cut(s)	41, 815, 1241
ApeKI	GCWGC	6 cut(s)	6, 165, 344, 857, 866, 932
ApoI	RAATTY	6 cut(s)	77, 86, 176, 630, 841, 1100
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
Asp700I	GAANNNNTTC	1 cut(s)	845
AspS9I	GGNCC	2 cut(s)	51, 963
AvaII	GGWCC	2 cut(s)	51, 963
BanII	GRGCYC	1 cut(s)	562
BauI	CACGAG	2 cut(s)	362, 555
BbsI	GAAGAC	2 cut(s)	698, 906
Bbv12I	GWGCWC	2 cut(s)	186, 562
BbvI	GCAGC	6 cut(s)	18, 177, 356, 844, 853, 919
BccI	CCATC	2 cut(s)	1216, 1223
BclI	TGATCA	2 cut(s)	745, 829
BfaI	CTAG	3 cut(s)	237, 947, 1172
BfmI	CTRYAG	1 cut(s)	1185
BfrI	CTTAAG	1 cut(s)	850
BisI	GCNGC	7 cut(s)	7, 166, 310, 345, 858, 867, 933
BlsI	GCNGC	7 cut(s)	8, 167, 311, 346, 859, 868, 934
Bme18I	GGWCC	2 cut(s)	51, 963
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	51, 963
BmsI	GCATC	9 cut(s)	223, 309, 385, 550, 796, 871, 893, 929, 1171
BpiI	GAAGAC	2 cut(s)	698, 906
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu10I	CCTNAGC	1 cut(s)	927
BsaJI	CCNNGG	2 cut(s)	38, 1283
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
Bse1I	ACTGG	2 cut(s)	389, 966
Bse3DI	GCAATG	1 cut(s)	612
BseDI	CCNNGG	2 cut(s)	38, 1283
BseGI	GGATG	4 cut(s)	358, 400, 811, 1234
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	2 cut(s)	61, 639
BseNI	ACTGG	2 cut(s)	389, 966
BseRI	GAGGAG	5 cut(s)	52, 93, 96, 111, 1013
BseXI	GCAGC	6 cut(s)	18, 177, 356, 844, 853, 919
BseYI	CCCAGC	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	43, 817, 1243
BsiHKAI	GWGCWC	2 cut(s)	186, 562
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	669
BsmI	GAATGC	2 cut(s)	370, 1059
BsnI	GGCC	3 cut(s)	43, 817, 1243
Bsp1286I	GDGCHC	2 cut(s)	186, 562
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	8 cut(s)	418, 596, 694, 745, 829, 949, 1148, 1279
Bsp19I	CCATGG	2 cut(s)	38, 1283
BspACI	CCGC	4 cut(s)	116, 307, 310, 383
BspANI	GGCC	3 cut(s)	43, 817, 1243
BspCNI	CTCAG	2 cut(s)	60, 638
BspFNI	CGCG	1 cut(s)	312
BspPI	GGATC	3 cut(s)	604, 689, 1274
BspTI	CTTAAG	1 cut(s)	850
BsrDI	GCAATG	1 cut(s)	612
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	389, 966
BssECI	CCNNGG	2 cut(s)	38, 1283
BssMI	GATC	8 cut(s)	418, 596, 694, 745, 829, 949, 1148, 1279
BssSI	CACGAG	2 cut(s)	362, 555
BssT1I	CCWWGG	2 cut(s)	38, 1283
Bst2BI	CACGAG	2 cut(s)	362, 555
Bst4CI	ACNGT	1 cut(s)	905
Bst6I	CTCTTC	3 cut(s)	61, 208, 457
BstAFI	CTTAAG	1 cut(s)	850
BstAPI	GCANNNNNTGC	2 cut(s)	866, 1001
BstAUI	TGTACA	1 cut(s)	504
BstC8I	GCNNGC	5 cut(s)	254, 918, 993, 1006, 1241
BstDEI	CTNAG	6 cut(s)	47, 547, 625, 791, 927, 1142
BstDSI	CCRYGG	2 cut(s)	38, 1283
BstF5I	GGATG	4 cut(s)	358, 400, 811, 1234
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	8 cut(s)	421, 599, 697, 748, 832, 952, 1151, 1282
BstMBI	GATC	8 cut(s)	418, 596, 694, 745, 829, 949, 1148, 1279
BstMWI	GCNNNNNNNGC	7 cut(s)	233, 306, 823, 863, 866, 932, 1001
BstSFI	CTRYAG	1 cut(s)	1185
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	6 cut(s)	18, 177, 356, 844, 853, 919
BstV2I	GAAGAC	2 cut(s)	698, 906
BsuRI	GGCC	3 cut(s)	43, 817, 1243
BtgI	CCRYGG	2 cut(s)	38, 1283
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	4 cut(s)	358, 400, 811, 1234
BtsIMutI	CAGTG	3 cut(s)	396, 910, 973
Cac8I	GCNNGC	5 cut(s)	254, 918, 993, 1006, 1241
Cfr13I	GGNCC	2 cut(s)	51, 963
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	5 cut(s)	39, 96, 749, 827, 1284
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	6 cut(s)	47, 547, 625, 791, 927, 1142
DpnI	GATC	8 cut(s)	420, 598, 696, 747, 831, 951, 1150, 1281
DpnII	GATC	8 cut(s)	418, 596, 694, 745, 829, 949, 1148, 1279
DraI	TTTAAA	1 cut(s)	1107
Eam1104I	CTCTTC	3 cut(s)	61, 208, 457
EarI	CTCTTC	3 cut(s)	61, 208, 457
EciI	GGCGGA	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	38, 1283
Eco147I	AGGCCT	1 cut(s)	1243
Eco24I	GRGCYC	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	51, 963
Eco53kI	GAGCTC	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	51
EcoT14I	CCWWGG	2 cut(s)	38, 1283
EcoT22I	ATGCAT	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	2 cut(s)	38, 1283
FaeI	CATG	5 cut(s)	42, 99, 752, 830, 1287
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	5 cut(s)	38, 95, 748, 826, 1283
FauNDI	CATATG	1 cut(s)	1249
FbaI	TGATCA	2 cut(s)	745, 829
Fnu4HI	GCNGC	7 cut(s)	7, 166, 310, 345, 858, 867, 933
FokI	GGATG	4 cut(s)	365, 407, 818, 1241
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	7 cut(s)	7, 166, 310, 345, 858, 867, 933
FspBI	CTAG	3 cut(s)	237, 947, 1172
GluI	GCNGC	7 cut(s)	7, 166, 310, 345, 858, 867, 933
GsaI	CCCAGC	1 cut(s)	13
HaeIII	GGCC	3 cut(s)	43, 817, 1243
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	5 cut(s)	42, 99, 752, 830, 1287
HinfI	GANTC	9 cut(s)	200, 210, 246, 356, 519, 740, 787, 1034, 1129
HpaII	CCGG	1 cut(s)	470
Hpy188I	TCNGA	6 cut(s)	274, 524, 628, 636, 745, 1279
Hpy188III	TCNNGA	7 cut(s)	49, 197, 207, 594, 692, 1118, 1172
Hpy99I	CGWCG	3 cut(s)	164, 194, 469
HpyAV	CCTTC	5 cut(s)	42, 81, 120, 796, 1254
HpyCH4III	ACNGT	1 cut(s)	905
HpyCH4IV	ACGT	2 cut(s)	159, 1012
HpyCH4V	TGCA	7 cut(s)	344, 605, 752, 860, 884, 920, 995
HpyF10VI	GCNNNNNNNGC	7 cut(s)	233, 306, 823, 863, 866, 932, 1001
HpyF3I	CTNAG	6 cut(s)	47, 547, 625, 791, 927, 1142
HpySE526I	ACGT	2 cut(s)	159, 1012
Hsp92II	CATG	5 cut(s)	42, 99, 752, 830, 1287
Ksp22I	TGATCA	2 cut(s)	745, 829
Kzo9I	GATC	8 cut(s)	418, 596, 694, 745, 829, 949, 1148, 1279
LmnI	GCTCC	3 cut(s)	17, 189, 1236
Lsp1109I	GCAGC	6 cut(s)	18, 177, 356, 844, 853, 919
LweI	GCATC	9 cut(s)	223, 309, 385, 550, 796, 871, 893, 929, 1171
MaeI	CTAG	3 cut(s)	237, 947, 1172
MaeII	ACGT	2 cut(s)	159, 1012
MaeIII	GTNAC	1 cut(s)	1268
MalI	GATC	8 cut(s)	420, 598, 696, 747, 831, 951, 1150, 1281
MboI	GATC	8 cut(s)	418, 596, 694, 745, 829, 949, 1148, 1279
MhlI	GDGCHC	2 cut(s)	186, 562
MlyI	GAGTC	3 cut(s)	194, 350, 1138
MmeI	TCCRAC	3 cut(s)	177, 462, 1214
Mph1103I	ATGCAT	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	845
MseI	TTAA	4 cut(s)	851, 972, 1106, 1209
MspA1I	CMGCKG	1 cut(s)	9
MspCI	CTTAAG	1 cut(s)	850
MspI	CCGG	1 cut(s)	470
Mva1269I	GAATGC	2 cut(s)	370, 1059
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	7 cut(s)	233, 306, 823, 863, 866, 932, 1001
NcoI	CCATGG	2 cut(s)	38, 1283
NdeI	CATATG	1 cut(s)	1249
NdeII	GATC	8 cut(s)	418, 596, 694, 745, 829, 949, 1148, 1279
NlaIII	CATG	5 cut(s)	42, 99, 752, 830, 1287
NsiI	ATGCAT	1 cut(s)	886
PceI	AGGCCT	1 cut(s)	1243
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 186, 195
PctI	GAATGC	2 cut(s)	370, 1059
PdmI	GAANNNNTTC	1 cut(s)	845
PfeI	GAWTC	6 cut(s)	210, 246, 519, 740, 787, 1034
PkrI	GCNGC	7 cut(s)	8, 167, 311, 346, 859, 868, 934
PleI	GAGTC	3 cut(s)	194, 350, 1137
PpsI	GAGTC	3 cut(s)	194, 350, 1137
PpuMI	RGGWCCY	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	562
Psp5II	RGGWCCY	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	51, 963
PspPPI	RGGWCCY	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	9
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SacI	GAGCTC	1 cut(s)	562
SaqAI	TTAA	4 cut(s)	851, 972, 1106, 1209
SatI	GCNGC	7 cut(s)	7, 166, 310, 345, 858, 867, 933
Sau3AI	GATC	8 cut(s)	418, 596, 694, 745, 829, 949, 1148, 1279
Sau96I	GGNCC	2 cut(s)	51, 963
SchI	GAGTC	3 cut(s)	194, 350, 1138
SduI	GDGCHC	2 cut(s)	186, 562
SfaNI	GCATC	9 cut(s)	223, 309, 385, 550, 796, 871, 893, 929, 1171
SfcI	CTRYAG	1 cut(s)	1185
SinI	GGWCC	2 cut(s)	51, 963
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
SseBI	AGGCCT	1 cut(s)	1243
SsiI	CCGC	4 cut(s)	116, 307, 310, 383
SspMI	CTAG	3 cut(s)	237, 947, 1172
SstI	GAGCTC	1 cut(s)	562
StuI	AGGCCT	1 cut(s)	1243
StyI	CCWWGG	2 cut(s)	38, 1283
TaaI	ACNGT	1 cut(s)	905
TaiI	ACGT	2 cut(s)	162, 1015
TaqI	TCGA	2 cut(s)	198, 1026
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	6 cut(s)	210, 246, 519, 740, 787, 1034
Tru1I	TTAA	4 cut(s)	851, 972, 1106, 1209
Tru9I	TTAA	4 cut(s)	851, 972, 1106, 1209
TscAI	CASTG	3 cut(s)	396, 910, 973
TseI	GCWGC	6 cut(s)	6, 165, 344, 857, 866, 932
TspDTI	ATGAA	6 cut(s)	84, 444, 865, 912, 1149, 1236
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	3 cut(s)	396, 910, 973
Vha464I	CTTAAG	1 cut(s)	850
VpaK11BI	GGWCC	2 cut(s)	51, 963
XapI	RAATTY	6 cut(s)	77, 86, 176, 630, 841, 1100
XbaI	TCTAGA	1 cut(s)	1171
XmnI	GAANNNNTTC	1 cut(s)	845
XspI	CTAG	3 cut(s)	237, 947, 1172
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.