Rh1AG060800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009711
Physical Location & Seq
Forward (+)
10010652 .. 10016264
5613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG060800.1

Sequence Viewer

Length: 1302 bp
ATGAGCAGGTGGGTTGGAGCTTCTTCTTCTCCTTCTCCATGGCCTCTCAGGACCTCTTCCTCTTCCTCCTCCTCCTCCTATCCTTCCAAATTCTTCAAATTCCATTCATGTCCTCCTCCTCCTTCTCCGCCTCCTCTGTTTCGTCCTCTCTGCCTCGCCCAATCCAACCACGTCGGCAGCGACTTCAAATTCGTGCTCCACGACGCTCTCGATTCTTCTGGAATCCTCACCTCTCACGCCAGAGATGCTAGGGAGGGATTCTGCTCGCAAATCGGCAAAATGTCTGATATAGAGAGGCAAACCAGCATTAGCATCAACCGCCGCGTTGATTTAGGGAAAACTGCTCTTTATATTGCAGCAGAGGATGACTCCCTCGTGTCGCATTCGTCCGTTCCGCTTCCAGTGGATGCTTTTATCAGTAGATTTGATGATCTTTCTATGGACTATTGTTCTCACTACAACTCTTCATTGAAATCGTCGCCGGAGAGGTTGTTGGAGAGTTTGGAAAATTATTTGTACATACACAAGGGATTCCGTAGAACCAACGCAAGGCATCTCTTAGAAACACGAGCTCTATATCTCCATTCGGTTTTGACACATCGTTCAGGATCAACTGCAATGCTATCACTAATATACTCAGAAATTCTGAAAATGCTTCGCTTATGGGGACTTTTGGATTTTGATGTGGAGATATTCTTTCCTCACGATCCTCATAGTCTTCCCAGAGGCTATCCCAAAAAGAAAAGCAAGGAATCTGATCATGCACACATAATGACATCACAAGCCCTTTTGGTTGAGATTCTAAGCAATTTGAAGGATGCTTTCTGGCCTTTTCAGCATGATCAATCAGGGAATTTATTCTTAAGGGCTGCACGGGCTGCTAACTTCATTGATGCATCAAATGTTGATGAAGACAGTGGCTTTCAGCTTGCATCTGCTAAGGCTGCTCAACATAGGCTAGATCGTGGTGTTTGGACCAGTGTTAATTTTGGGGATATGAGGCGTGCATTATCTGCTTGCGAACGTCTTATTCTCCTCGAAGCTGATTCAAAGGAATTGAGAGATTATAGCATTCTTCTCTACCATTGTGGGTTTTATGAGCAATCACTTGAATTTTTAAAGTTGTATCAGGACACAAAGACTCGCCCACAACTTAGACGATCATCTAATTCATCAACCAATCTAGAGGAAGATGCTGTAGAGAAGTTGATGATACGCCTTAAACTAATTTTGATGGAGGATGGTTGGAGCAGGCCTTCATATGTAAGAAACTTTCTTGGTAACAGCTCTGATCCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transglut_core2

Protein Analysis

433

Amino Acids

49.14

Weight (kDa)

7.29

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 144 - 220 5e-07 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 128, 319, 322, 395
AclWI GGATC 3 cut(s) 616, 701, 1286
AcsI RAATTY 6 cut(s) 89, 98, 188, 642, 853, 1112
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 549
AflII CTTAAG 1 cut(s) 862
AgsI TTSAA 6 cut(s) 97, 187, 472, 814, 1050, 1112
AjiI CACGTC 1 cut(s) 172
AluBI AGCT 5 cut(s) 20, 572, 928, 1043, 1287
AluI AGCT 5 cut(s) 20, 572, 928, 1043, 1287
Alw21I GWGCWC 2 cut(s) 198, 574
AlwI GGATC 3 cut(s) 616, 701, 1286
AoxI GGCC 3 cut(s) 41, 827, 1253
ApeKI GCWGC 5 cut(s) 177, 356, 869, 878, 944
ApoI RAATTY 6 cut(s) 89, 98, 188, 642, 853, 1112
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
Asp700I GAANNNNTTC 1 cut(s) 857
AspS9I GGNCC 2 cut(s) 51, 975
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 51, 975
BanII GRGCYC 1 cut(s) 574
BauI CACGAG 2 cut(s) 374, 567
BbsI GAAGAC 2 cut(s) 710, 918
Bbv12I GWGCWC 2 cut(s) 198, 574
BbvI GCAGC 5 cut(s) 189, 368, 856, 865, 931
BccI CCATC 2 cut(s) 1228, 1235
BclI TGATCA 2 cut(s) 757, 841
BfaI CTAG 3 cut(s) 249, 959, 1184
BfmI CTRYAG 1 cut(s) 1197
BfrI CTTAAG 1 cut(s) 862
BisI GCNGC 6 cut(s) 178, 322, 357, 870, 879, 945
BlsI GCNGC 6 cut(s) 179, 323, 358, 871, 880, 946
Bme18I GGWCC 2 cut(s) 51, 975
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 51, 975
BmsI GCATC 9 cut(s) 235, 321, 397, 562, 808, 883, 905, 941, 1183
BpiI GAAGAC 2 cut(s) 710, 918
BplI GAGNNNNNCTC 2 cut(s) 353, 385
Bpu10I CCTNAGC 1 cut(s) 939
BsaJI CCNNGG 2 cut(s) 38, 1295
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse1I ACTGG 2 cut(s) 401, 978
Bse3DI GCAATG 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 38, 1295
BseGI GGATG 4 cut(s) 370, 412, 823, 1246
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 61, 651
BseNI ACTGG 2 cut(s) 401, 978
BseRI GAGGAG 7 cut(s) 58, 61, 64, 105, 108, 123, 1025
BseXI GCAGC 5 cut(s) 189, 368, 856, 865, 931
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 3 cut(s) 43, 829, 1255
BsiHKAI GWGCWC 2 cut(s) 198, 574
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 681
BsmI GAATGC 2 cut(s) 382, 1071
BsnI GGCC 3 cut(s) 43, 829, 1255
Bsp1286I GDGCHC 2 cut(s) 198, 574
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 8 cut(s) 430, 608, 706, 757, 841, 961, 1160, 1291
Bsp19I CCATGG 2 cut(s) 38, 1295
BspACI CCGC 4 cut(s) 128, 319, 322, 395
BspANI GGCC 3 cut(s) 43, 829, 1255
BspCNI CTCAG 2 cut(s) 60, 650
BspFNI CGCG 1 cut(s) 324
BspPI GGATC 3 cut(s) 616, 701, 1286
BspTI CTTAAG 1 cut(s) 862
BsrDI GCAATG 1 cut(s) 624
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 2 cut(s) 401, 978
BssECI CCNNGG 2 cut(s) 38, 1295
BssMI GATC 8 cut(s) 430, 608, 706, 757, 841, 961, 1160, 1291
BssSI CACGAG 2 cut(s) 374, 567
BssT1I CCWWGG 2 cut(s) 38, 1295
Bst2BI CACGAG 2 cut(s) 374, 567
Bst4CI ACNGT 1 cut(s) 917
Bst6I CTCTTC 3 cut(s) 61, 67, 469
BstAFI CTTAAG 1 cut(s) 862
BstAPI GCANNNNNTGC 2 cut(s) 878, 1013
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 5 cut(s) 266, 930, 1005, 1018, 1253
BstDEI CTNAG 6 cut(s) 47, 559, 637, 803, 939, 1154
BstDSI CCRYGG 2 cut(s) 38, 1295
BstF5I GGATG 4 cut(s) 370, 412, 823, 1246
BstFNI CGCG 1 cut(s) 324
BstKTI GATC 8 cut(s) 433, 611, 709, 760, 844, 964, 1163, 1294
BstMBI GATC 8 cut(s) 430, 608, 706, 757, 841, 961, 1160, 1291
BstMWI GCNNNNNNNGC 7 cut(s) 245, 318, 835, 875, 878, 944, 1013
BstSFI CTRYAG 1 cut(s) 1197
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 5 cut(s) 189, 368, 856, 865, 931
BstV2I GAAGAC 2 cut(s) 710, 918
BsuRI GGCC 3 cut(s) 43, 829, 1255
BtgI CCRYGG 2 cut(s) 38, 1295
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 4 cut(s) 370, 412, 823, 1246
BtsIMutI CAGTG 3 cut(s) 408, 922, 985
Cac8I GCNNGC 5 cut(s) 266, 930, 1005, 1018, 1253
Cfr13I GGNCC 2 cut(s) 51, 975
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 517
CviAII CATG 5 cut(s) 39, 108, 761, 839, 1296
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 6 cut(s) 47, 559, 637, 803, 939, 1154
DpnI GATC 8 cut(s) 432, 610, 708, 759, 843, 963, 1162, 1293
DpnII GATC 8 cut(s) 430, 608, 706, 757, 841, 961, 1160, 1291
DraI TTTAAA 1 cut(s) 1119
Eam1104I CTCTTC 3 cut(s) 61, 67, 469
EarI CTCTTC 3 cut(s) 61, 67, 469
EciI GGCGGA 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 572
Eco130I CCWWGG 2 cut(s) 38, 1295
Eco147I AGGCCT 1 cut(s) 1255
Eco24I GRGCYC 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 51, 975
Eco53kI GAGCTC 1 cut(s) 572
EcoICRI GAGCTC 1 cut(s) 572
EcoO109I RGGNCCY 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 38, 1295
EcoT22I ATGCAT 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 2 cut(s) 38, 1295
FaeI CATG 5 cut(s) 42, 111, 764, 842, 1299
FaqI GGGAC 1 cut(s) 681
FatI CATG 5 cut(s) 38, 107, 760, 838, 1295
FauNDI CATATG 1 cut(s) 1261
FbaI TGATCA 2 cut(s) 757, 841
Fnu4HI GCNGC 6 cut(s) 178, 322, 357, 870, 879, 945
FokI GGATG 4 cut(s) 377, 419, 830, 1253
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 6 cut(s) 178, 322, 357, 870, 879, 945
FspBI CTAG 3 cut(s) 249, 959, 1184
GluI GCNGC 6 cut(s) 178, 322, 357, 870, 879, 945
HaeIII GGCC 3 cut(s) 43, 829, 1255
HapII CCGG 1 cut(s) 482
HgaI GACGC 1 cut(s) 212
Hin1II CATG 5 cut(s) 42, 111, 764, 842, 1299
HinfI GANTC 9 cut(s) 212, 222, 258, 368, 531, 752, 799, 1046, 1141
HpaII CCGG 1 cut(s) 482
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 5 cut(s) 286, 640, 648, 757, 1291
Hpy188III TCNNGA 7 cut(s) 49, 209, 219, 606, 704, 1130, 1184
Hpy99I CGWCG 3 cut(s) 176, 206, 481
HpyAV CCTTC 5 cut(s) 42, 93, 132, 808, 1266
HpyCH4III ACNGT 1 cut(s) 917
HpyCH4IV ACGT 2 cut(s) 171, 1024
HpyCH4V TGCA 7 cut(s) 356, 617, 764, 872, 896, 932, 1007
HpyF10VI GCNNNNNNNGC 7 cut(s) 245, 318, 835, 875, 878, 944, 1013
HpyF3I CTNAG 6 cut(s) 47, 559, 637, 803, 939, 1154
HpySE526I ACGT 2 cut(s) 171, 1024
Hsp92II CATG 5 cut(s) 42, 111, 764, 842, 1299
Ksp22I TGATCA 2 cut(s) 757, 841
Kzo9I GATC 8 cut(s) 430, 608, 706, 757, 841, 961, 1160, 1291
LmnI GCTCC 3 cut(s) 17, 201, 1248
Lsp1109I GCAGC 5 cut(s) 189, 368, 856, 865, 931
LweI GCATC 9 cut(s) 235, 321, 397, 562, 808, 883, 905, 941, 1183
MaeI CTAG 3 cut(s) 249, 959, 1184
MaeII ACGT 2 cut(s) 171, 1024
MaeIII GTNAC 1 cut(s) 1280
MalI GATC 8 cut(s) 432, 610, 708, 759, 843, 963, 1162, 1293
MboI GATC 8 cut(s) 430, 608, 706, 757, 841, 961, 1160, 1291
MhlI GDGCHC 2 cut(s) 198, 574
MlyI GAGTC 2 cut(s) 362, 1135
MmeI TCCRAC 3 cut(s) 189, 474, 1226
Mph1103I ATGCAT 1 cut(s) 898
MroXI GAANNNNTTC 1 cut(s) 857
MseI TTAA 4 cut(s) 863, 984, 1118, 1221
MspCI CTTAAG 1 cut(s) 862
MspI CCGG 1 cut(s) 482
Mva1269I GAATGC 2 cut(s) 382, 1071
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 7 cut(s) 245, 318, 835, 875, 878, 944, 1013
NcoI CCATGG 2 cut(s) 38, 1295
NdeI CATATG 1 cut(s) 1261
NdeII GATC 8 cut(s) 430, 608, 706, 757, 841, 961, 1160, 1291
NlaIII CATG 5 cut(s) 42, 111, 764, 842, 1299
NsiI ATGCAT 1 cut(s) 898
PceI AGGCCT 1 cut(s) 1255
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 198, 207
PctI GAATGC 2 cut(s) 382, 1071
PdmI GAANNNNTTC 1 cut(s) 857
PfeI GAWTC 7 cut(s) 212, 222, 258, 531, 752, 799, 1046
PkrI GCNGC 6 cut(s) 179, 323, 358, 871, 880, 946
PleI GAGTC 2 cut(s) 362, 1135
PpsI GAGTC 2 cut(s) 362, 1135
PpuMI RGGWCCY 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 574
Psp5II RGGWCCY 1 cut(s) 51
PspPI GGNCC 2 cut(s) 51, 975
PspPPI RGGWCCY 1 cut(s) 51
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
SacI GAGCTC 1 cut(s) 574
SaqAI TTAA 4 cut(s) 863, 984, 1118, 1221
SatI GCNGC 6 cut(s) 178, 322, 357, 870, 879, 945
Sau3AI GATC 8 cut(s) 430, 608, 706, 757, 841, 961, 1160, 1291
Sau96I GGNCC 2 cut(s) 51, 975
SchI GAGTC 2 cut(s) 362, 1135
SduI GDGCHC 2 cut(s) 198, 574
SfaNI GCATC 9 cut(s) 235, 321, 397, 562, 808, 883, 905, 941, 1183
SfcI CTRYAG 1 cut(s) 1197
SinI GGWCC 2 cut(s) 51, 975
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
SseBI AGGCCT 1 cut(s) 1255
SsiI CCGC 4 cut(s) 128, 319, 322, 395
SspMI CTAG 3 cut(s) 249, 959, 1184
SstI GAGCTC 1 cut(s) 574
StuI AGGCCT 1 cut(s) 1255
StyI CCWWGG 2 cut(s) 38, 1295
TaaI ACNGT 1 cut(s) 917
TaiI ACGT 2 cut(s) 174, 1027
TaqI TCGA 2 cut(s) 210, 1038
TatI WGTACW 1 cut(s) 516
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 7 cut(s) 212, 222, 258, 531, 752, 799, 1046
Tru1I TTAA 4 cut(s) 863, 984, 1118, 1221
Tru9I TTAA 4 cut(s) 863, 984, 1118, 1221
TscAI CASTG 3 cut(s) 408, 922, 985
TseI GCWGC 5 cut(s) 177, 356, 869, 878, 944
TspDTI ATGAA 6 cut(s) 96, 456, 877, 924, 1161, 1248
TspGWI ACGGA 2 cut(s) 379, 524
TspRI CASTG 3 cut(s) 408, 922, 985
Vha464I CTTAAG 1 cut(s) 862
VpaK11BI GGWCC 2 cut(s) 51, 975
XapI RAATTY 6 cut(s) 89, 98, 188, 642, 853, 1112
XbaI TCTAGA 1 cut(s) 1183
XmnI GAANNNNTTC 1 cut(s) 857
XspI CTAG 3 cut(s) 249, 959, 1184
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.