MD02G1286500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0009711
Physical Location & Seq
Reverse (-)
34312187 .. 34314495
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1286500.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGTGCTTTTTGGATTTTTCGATGCGGATATATTGTTTGGTCACGGTCTTCATAGTCTTCCCGGAGGTTACCATAAACAGAAAAGCAAGGAATCTGATAATGCACGCATAATGACTTTGCAAGCCGTTTTAGTGGAGATGAGGGTGCATTCTTGCCCATTTCAGCATGATGAACCAGGGAATTTGTTCTTGAGGGCAGCACGTGCTGCTAACTTTATTGATAAGGTCGTCGTACCCAGTGCACAAGGCTCCCGCTTTACGCAGGGTCTGGGAGAGGTGAATGTCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transglut_core2

Protein Analysis

97

Amino Acids

10.53

Weight (kDa)

6.96

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 26, 253
AcsI RAATTY 1 cut(s) 181
AcvI CACGTG 1 cut(s) 203
AfaI GTAC 1 cut(s) 234
AjnI CCWGG 1 cut(s) 175
Alw21I GWGCWC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 268
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 197, 206
ApoI RAATTY 1 cut(s) 181
Asp700I GAANNNNTTC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 244
BbrPI CACGTG 1 cut(s) 203
BbsI GAAGAC 2 cut(s) 41, 50
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 193, 209
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 177
BcnI CCSGG 1 cut(s) 63
BfaI CTAG 1 cut(s) 289
BisI GCNGC 2 cut(s) 198, 207
BlsI GCNGC 2 cut(s) 199, 208
Bme1390I CCNGG 2 cut(s) 63, 177
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 2 cut(s) 63, 177
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 231
BpiI GAAGAC 2 cut(s) 41, 50
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 2 cut(s) 193, 209
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 63
BsmI GAATGC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 244
BspACI CCGC 2 cut(s) 26, 253
BspLI GGNNCC 1 cut(s) 250
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 47
BstAPI GCANNNNNTGC 2 cut(s) 203, 206
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 106, 123
BstEII GGTNACC 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 203, 206
BstNI CCWGG 1 cut(s) 177
BstPI GGTNACC 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 61, 175
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 193, 209
BstV2I GAAGAC 2 cut(s) 41, 50
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 106, 123
CaiI CAGNNNCTG 1 cut(s) 268
Csp6I GTAC 1 cut(s) 233
CviAII CATG 1 cut(s) 167
CviJI RGCY 3 cut(s) 125, 249, 288
CviKI_1 RGCY 3 cut(s) 125, 249, 288
CviQI GTAC 1 cut(s) 233
Eco72I CACGTG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 68
EcoO65I GGTNACC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 175
FaeI CATG 1 cut(s) 170
FaiI YATR 5 cut(s) 32, 54, 75, 110, 168
FatI CATG 1 cut(s) 166
FauI CCCGC 1 cut(s) 260
Fnu4HI GCNGC 2 cut(s) 198, 207
Fsp4HI GCNGC 2 cut(s) 198, 207
FspBI CTAG 1 cut(s) 289
GluI GCNGC 2 cut(s) 198, 207
HapII CCGG 1 cut(s) 63
Hin1II CATG 1 cut(s) 170
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 242
Hpy99I CGWCG 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 104, 121, 148, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 206
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 1 cut(s) 170
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 6 cut(s) 76, 162, 189, 248, 250, 254
Lsp1109I GCAGC 2 cut(s) 193, 209
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 289
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 41, 68
MboII GAAGA 2 cut(s) 41, 50
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 181
MnlI CCTC 4 cut(s) 59, 135, 186, 268
MroXI GAANNNNTTC 1 cut(s) 185
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 63, 177
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 203, 206
NciI CCSGG 1 cut(s) 63
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 41
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 61
PkrI GCNGC 2 cut(s) 199, 208
PmaCI CACGTG 1 cut(s) 203
PmlI CACGTG 1 cut(s) 203
Ppu21I YACGTR 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 175
PspCI CACGTG 1 cut(s) 203
PspEI GGTNACC 1 cut(s) 68
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 268
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SatI GCNGC 2 cut(s) 198, 207
ScrFI CCNGG 2 cut(s) 63, 177
SduI GDGCHC 1 cut(s) 244
SetI ASST 4 cut(s) 70, 205, 228, 279
SfaNI GCATC 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 1 cut(s) 181
SsiI CCGC 2 cut(s) 26, 253
SspMI CTAG 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 61, 175
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 181
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 197, 206
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 41, 186
TspRI CASTG 1 cut(s) 244
VneI GTGCAC 1 cut(s) 240
XapI RAATTY 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.