Rw1G005180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0009711
Physical Location & Seq
Forward (+)
10024419 .. 10030762
6344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005180.1

Sequence Viewer

Length: 1314 bp
ATGAGCAGCTGGGTTGGAGCTTCTTCTTCTCCTTCTCCATGGCCTCTCAGGACCTCTTCCTCTTCCTCCTCCTATCCTTCCAAATTCTTCAAATTCCATTCATGTCCTCCTCCTCCTTCTCCGCCTCCTCTGTTTCGTCCTCTCTGCCTCGCCCAATCCAACCACGTCGGCAGCGACTTCAAATTCGTGCTCCACGACGCTCTCGATTCTTCTGGAATCCTCACCTCTCACGCCAGAGATGCTAGGGAGGGATTCTGCTCGCAAATCGGCAAAATGTCTGATATAGAGAGGCAAACCAGCATTAGCATCAACCGCCGCGTTGATTTAGGGAAAACTGCTCTTTATATTGCAGCAGAGGATGACTCCCTCGTGTCGCATTCGTCCGTTCCGCTTCCAGTGGATGCTTTTATCAGTAGATTTGATGATCTTTCTATGGACTATTGTTCTCACTACAACTCTTCATTGAAATCATCGCCGGAGAGGTTGTTGGAGAGTTTGGAAAATTATTTGTACATACACAAGGGATTCCGAAGAACCAACGCAAGGCATCTCTTAGAAACACGAGCTCTATATCTCCATTCGGTTTTGACACATCGTTCAGGATCAACTGCAATGCTATCACTAATATACTCAGAAATTCTGAAAATGCTTCGCTTATGGGGACTTTTGGATTTTGATGTGGAGATATTCTTTCCTCACGATCCTCATAGTCTTCCCAGAGGCTATCCCAAAAAGAAAAGCAAGGAATCTGATCATGCACACATAATGACATCACAAGCCCTTTTGGTTGAGATTCTAAGCAATTTGAAGGATGCTTTCTGGCCTTTTCAGCATGATCAATCAGGGAATTTATTCTTAAGGGCTGCACGGGCTGCTAACTTCATTGATGCATCAAATGTTGATGAAGACAGTGGCTTTCAGCTTGCATCTGCTAAGGCTGCTCAACATAGGCTAGATCGTGGTGTTTGGACCAGTGTTAATTTTGGGGATATGAGGCGTGCATTATCTGCTTGCGAACGTCTTATTCTCCTCGAAGCTGATTCAAAGGAATTGAGAGATTATAGCATTCTTCTCTACCATTGTGGGTTTTATGAGCAATCACTTGAATTTTTAAAGTTGTATCAGGACACAAAGAGTCGCCCACAACTTAGACGATCATCTAATTCATCAACCAATCTAGAGGAAGATGCTGTAGAGAAGTTGATGATACGCCTTAAACTAATTTTGATGGAGGATGGTTGGAGCAGGCCTTCATATGTAAGAAACTTTCTTGGTTTATGCCATGATCTTCATCAGTTGTGTGCTCAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transglut_core2

Protein Analysis

437

Amino Acids

49.6

Weight (kDa)

7.03

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 142 - 218 5.1e-07 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 318
AciI CCGC 4 cut(s) 122, 313, 316, 389
AclWI GGATC 2 cut(s) 610, 695
AcsI RAATTY 6 cut(s) 83, 92, 182, 636, 847, 1106
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 1 cut(s) 543
AflII CTTAAG 1 cut(s) 856
AgsI TTSAA 6 cut(s) 91, 181, 466, 808, 1044, 1106
AjiI CACGTC 1 cut(s) 166
AluBI AGCT 5 cut(s) 9, 20, 566, 922, 1037
AluI AGCT 5 cut(s) 9, 20, 566, 922, 1037
Alw21I GWGCWC 3 cut(s) 192, 568, 1306
AlwI GGATC 2 cut(s) 610, 695
AoxI GGCC 3 cut(s) 41, 821, 1247
ApeKI GCWGC 6 cut(s) 6, 171, 350, 863, 872, 938
ApoI RAATTY 6 cut(s) 83, 92, 182, 636, 847, 1106
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
Asp700I GAANNNNTTC 1 cut(s) 851
AspS9I GGNCC 2 cut(s) 51, 969
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 2 cut(s) 51, 969
BanII GRGCYC 1 cut(s) 568
BauI CACGAG 2 cut(s) 368, 561
BbsI GAAGAC 2 cut(s) 704, 912
Bbv12I GWGCWC 3 cut(s) 192, 568, 1306
BbvI GCAGC 6 cut(s) 18, 183, 362, 850, 859, 925
BccI CCATC 2 cut(s) 1222, 1229
BclI TGATCA 2 cut(s) 751, 835
BfaI CTAG 3 cut(s) 243, 953, 1178
BfmI CTRYAG 1 cut(s) 1191
BfrI CTTAAG 1 cut(s) 856
BisI GCNGC 7 cut(s) 7, 172, 316, 351, 864, 873, 939
BlsI GCNGC 7 cut(s) 8, 173, 317, 352, 865, 874, 940
Bme18I GGWCC 2 cut(s) 51, 969
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 51, 969
BmsI GCATC 9 cut(s) 229, 315, 391, 556, 802, 877, 899, 935, 1177
BpiI GAAGAC 2 cut(s) 704, 912
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 933
BsaBI GATNNNNATC 1 cut(s) 1290
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 543
Bse1I ACTGG 2 cut(s) 395, 972
Bse3DI GCAATG 1 cut(s) 618
Bse8I GATNNNNATC 1 cut(s) 1290
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 4 cut(s) 364, 406, 817, 1240
BseJI GATNNNNATC 1 cut(s) 1290
BseLI CCNNNNNNNGG 1 cut(s) 543
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 2 cut(s) 61, 645
BseNI ACTGG 2 cut(s) 395, 972
BseRI GAGGAG 5 cut(s) 58, 99, 102, 117, 1019
BseXI GCAGC 6 cut(s) 18, 183, 362, 850, 859, 925
BseYI CCCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 43, 823, 1249
BsiHKAI GWGCWC 3 cut(s) 192, 568, 1306
BsiSI CCGG 1 cut(s) 476
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 1 cut(s) 543
BsmFI GGGAC 1 cut(s) 675
BsmI GAATGC 2 cut(s) 376, 1065
BsnI GGCC 3 cut(s) 43, 823, 1249
Bsp1286I GDGCHC 3 cut(s) 192, 568, 1306
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 8 cut(s) 424, 602, 700, 751, 835, 955, 1154, 1285
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 4 cut(s) 122, 313, 316, 389
BspANI GGCC 3 cut(s) 43, 823, 1249
BspCNI CTCAG 2 cut(s) 60, 644
BspFNI CGCG 1 cut(s) 318
BspPI GGATC 2 cut(s) 610, 695
BspTI CTTAAG 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 618
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 2 cut(s) 395, 972
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 8 cut(s) 424, 602, 700, 751, 835, 955, 1154, 1285
BssSI CACGAG 2 cut(s) 368, 561
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 2 cut(s) 368, 561
Bst4CI ACNGT 1 cut(s) 911
Bst6I CTCTTC 3 cut(s) 61, 67, 463
BstAFI CTTAAG 1 cut(s) 856
BstAPI GCANNNNNTGC 2 cut(s) 872, 1007
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 5 cut(s) 260, 924, 999, 1012, 1247
BstDEI CTNAG 7 cut(s) 47, 553, 631, 797, 933, 1148, 1305
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 4 cut(s) 364, 406, 817, 1240
BstFNI CGCG 1 cut(s) 318
BstKTI GATC 8 cut(s) 427, 605, 703, 754, 838, 958, 1157, 1288
BstMBI GATC 8 cut(s) 424, 602, 700, 751, 835, 955, 1154, 1285
BstMWI GCNNNNNNNGC 7 cut(s) 239, 312, 829, 869, 872, 938, 1007
BstSFI CTRYAG 1 cut(s) 1191
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 6 cut(s) 18, 183, 362, 850, 859, 925
BstV2I GAAGAC 2 cut(s) 704, 912
BsuRI GGCC 3 cut(s) 43, 823, 1249
BtgI CCRYGG 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 456
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 4 cut(s) 364, 406, 817, 1240
BtsIMutI CAGTG 3 cut(s) 402, 916, 979
Cac8I GCNNGC 5 cut(s) 260, 924, 999, 1012, 1247
Cfr13I GGNCC 2 cut(s) 51, 969
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 511
CviAII CATG 5 cut(s) 39, 102, 755, 833, 1283
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 7 cut(s) 47, 553, 631, 797, 933, 1148, 1305
DpnI GATC 8 cut(s) 426, 604, 702, 753, 837, 957, 1156, 1287
DpnII GATC 8 cut(s) 424, 602, 700, 751, 835, 955, 1154, 1285
DraI TTTAAA 1 cut(s) 1113
Eam1104I CTCTTC 3 cut(s) 61, 67, 463
EarI CTCTTC 3 cut(s) 61, 67, 463
EciI GGCGGA 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 38
Eco147I AGGCCT 1 cut(s) 1249
Eco24I GRGCYC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 51, 969
Eco53kI GAGCTC 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 892
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 5 cut(s) 42, 105, 758, 836, 1286
FaqI GGGAC 1 cut(s) 675
FatI CATG 5 cut(s) 38, 101, 754, 832, 1282
FauNDI CATATG 1 cut(s) 1255
FbaI TGATCA 2 cut(s) 751, 835
Fnu4HI GCNGC 7 cut(s) 7, 172, 316, 351, 864, 873, 939
FokI GGATG 4 cut(s) 371, 413, 824, 1247
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 7 cut(s) 7, 172, 316, 351, 864, 873, 939
FspBI CTAG 3 cut(s) 243, 953, 1178
GluI GCNGC 7 cut(s) 7, 172, 316, 351, 864, 873, 939
GsaI CCCAGC 1 cut(s) 13
HaeIII GGCC 3 cut(s) 43, 823, 1249
HapII CCGG 1 cut(s) 476
HgaI GACGC 1 cut(s) 206
Hin1II CATG 5 cut(s) 42, 105, 758, 836, 1286
HinfI GANTC 9 cut(s) 206, 216, 252, 362, 525, 746, 793, 1040, 1135
HpaII CCGG 1 cut(s) 476
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 5 cut(s) 280, 530, 634, 642, 751
Hpy188III TCNNGA 7 cut(s) 49, 203, 213, 600, 698, 1124, 1178
Hpy99I CGWCG 2 cut(s) 170, 200
HpyAV CCTTC 5 cut(s) 42, 87, 126, 802, 1260
HpyCH4III ACNGT 1 cut(s) 911
HpyCH4IV ACGT 2 cut(s) 165, 1018
HpyCH4V TGCA 7 cut(s) 350, 611, 758, 866, 890, 926, 1001
HpyF10VI GCNNNNNNNGC 7 cut(s) 239, 312, 829, 869, 872, 938, 1007
HpyF3I CTNAG 7 cut(s) 47, 553, 631, 797, 933, 1148, 1305
HpySE526I ACGT 2 cut(s) 165, 1018
Hsp92II CATG 5 cut(s) 42, 105, 758, 836, 1286
Ksp22I TGATCA 2 cut(s) 751, 835
Kzo9I GATC 8 cut(s) 424, 602, 700, 751, 835, 955, 1154, 1285
LmnI GCTCC 3 cut(s) 17, 195, 1242
Lsp1109I GCAGC 6 cut(s) 18, 183, 362, 850, 859, 925
LweI GCATC 9 cut(s) 229, 315, 391, 556, 802, 877, 899, 935, 1177
MaeI CTAG 3 cut(s) 243, 953, 1178
MaeII ACGT 2 cut(s) 165, 1018
MalI GATC 8 cut(s) 426, 604, 702, 753, 837, 957, 1156, 1287
MboI GATC 8 cut(s) 424, 602, 700, 751, 835, 955, 1154, 1285
MhlI GDGCHC 3 cut(s) 192, 568, 1306
MlyI GAGTC 2 cut(s) 356, 1144
MmeI TCCRAC 3 cut(s) 183, 468, 1220
Mph1103I ATGCAT 1 cut(s) 892
MroXI GAANNNNTTC 1 cut(s) 851
MseI TTAA 4 cut(s) 857, 978, 1112, 1215
MspA1I CMGCKG 1 cut(s) 9
MspCI CTTAAG 1 cut(s) 856
MspI CCGG 1 cut(s) 476
Mva1269I GAATGC 2 cut(s) 376, 1065
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 7 cut(s) 239, 312, 829, 869, 872, 938, 1007
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 1255
NdeII GATC 8 cut(s) 424, 602, 700, 751, 835, 955, 1154, 1285
NlaIII CATG 5 cut(s) 42, 105, 758, 836, 1286
NsiI ATGCAT 1 cut(s) 892
PceI AGGCCT 1 cut(s) 1249
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 192, 201
PctI GAATGC 2 cut(s) 376, 1065
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 7 cut(s) 206, 216, 252, 525, 746, 793, 1040
PkrI GCNGC 7 cut(s) 8, 173, 317, 352, 865, 874, 940
PleI GAGTC 2 cut(s) 356, 1143
PpsI GAGTC 2 cut(s) 356, 1143
PpuMI RGGWCCY 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 568
Psp5II RGGWCCY 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 51, 969
PspPPI RGGWCCY 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SacI GAGCTC 1 cut(s) 568
SaqAI TTAA 4 cut(s) 857, 978, 1112, 1215
SatI GCNGC 7 cut(s) 7, 172, 316, 351, 864, 873, 939
Sau3AI GATC 8 cut(s) 424, 602, 700, 751, 835, 955, 1154, 1285
Sau96I GGNCC 2 cut(s) 51, 969
SchI GAGTC 2 cut(s) 356, 1144
SduI GDGCHC 3 cut(s) 192, 568, 1306
SfaNI GCATC 9 cut(s) 229, 315, 391, 556, 802, 877, 899, 935, 1177
SfcI CTRYAG 1 cut(s) 1191
SinI GGWCC 2 cut(s) 51, 969
SmlI CTYRAG 1 cut(s) 856
SmoI CTYRAG 1 cut(s) 856
SseBI AGGCCT 1 cut(s) 1249
SsiI CCGC 4 cut(s) 122, 313, 316, 389
SspMI CTAG 3 cut(s) 243, 953, 1178
SstI GAGCTC 1 cut(s) 568
StuI AGGCCT 1 cut(s) 1249
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 911
TaiI ACGT 2 cut(s) 168, 1021
TaqI TCGA 2 cut(s) 204, 1032
TatI WGTACW 1 cut(s) 510
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 7 cut(s) 206, 216, 252, 525, 746, 793, 1040
Tru1I TTAA 4 cut(s) 857, 978, 1112, 1215
Tru9I TTAA 4 cut(s) 857, 978, 1112, 1215
TscAI CASTG 3 cut(s) 402, 916, 979
TseI GCWGC 6 cut(s) 6, 171, 350, 863, 872, 938
TspDTI ATGAA 7 cut(s) 90, 450, 871, 918, 1155, 1242, 1280
TspGWI ACGGA 1 cut(s) 373
TspRI CASTG 3 cut(s) 402, 916, 979
Vha464I CTTAAG 1 cut(s) 856
VpaK11BI GGWCC 2 cut(s) 51, 969
XapI RAATTY 6 cut(s) 83, 92, 182, 636, 847, 1106
XbaI TCTAGA 1 cut(s) 1177
XmnI GAANNNNTTC 1 cut(s) 851
XspI CTAG 3 cut(s) 243, 953, 1178
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.