Rh1DG067500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009711
Physical Location & Seq
Forward (+)
11895426 .. 11900970
5545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG067500.1

Sequence Viewer

Length: 1032 bp
ATGAGCAGCTGGGTTGGAGCTTCTTCTTCTTCTTCTCCCTGGCCTCTCAGGACCTCTTCCTCTTCCTCTTCCTCCTCCTATCCTTCCAAATTCTTCAAATTCCATTCATGTCCTCCTCCTCCTTCTCCGCCTCCTCTGTTTCGTCCTCTCTGCCTCGCCCAATCCAACCACGTCGGCAGCGACTTCAAATTCGTGCTCCACGACGCTCTCGATTCTTCTGGAATCCTCACCTCTCACGCCAGAGATGCTAGGGAGGGATTCTGCTCGCAAATCGGCAAAATGTCTGATATAGAGAGGCAAACCAGCATTAGCATCAACCGCCGCGTTGATTTAGGGAAAACTGCTCTTTATATTGCAGCAGAGGATGACTCCCTCGTGTCGCATTCGTCCGTTCCGCTTCCAGTGGATGCTTTTATCAGTAGATTTGATGATCTTTCTATGGACTATTGTTCTCACTACAACTCTTCATTGAAATCGTCGCCGGAGAGGTTGTTGGAGAGTTTGGAAAATTATTTGTACATACACAAGGGATTCCGAAGAACCAACGCAAGGCATCTCTTAGAAACACGAGCTCTATATCTCCATTCGGTTTTGACACATCGTTCAGGATCAACTGCAATGCTATCACTAATATACTCAGAAATTCTGAAAATGCTTCGCTTATGGGGACTTTTGGATTTTGATGTGGAGATATTCTTTCCTCACGATCCTCATAGTCTTCCCAGAGGCTATCCCAAAAAGAAAAGCAAGGAATCTGATCATGCACACATAATGACATCACAAGCCCTTTTGGTTGAGATTCTAAGCAATTTGAAGGATGCTTTCTGGCCTTTTCAGCATGATCAATCAGGGAATTTATTCTTAAGGGCTGCACGGGCTGCTAACTTCATTGATGCATCAAATGTTGATGAAGACAGTGGCTTTCAGCTTGCATCTGCTAAGGCTGCTCAACATAGGCTAGATCGTGGTGTTTGGACCAGTGTTAATTTTGGGGATATGAGGCGTGCATTATCGGGTATGTGTTCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transglut_core2

Protein Analysis

343

Amino Acids

38.33

Weight (kDa)

7.77

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 144 - 220 3.4e-07 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 128, 319, 322, 395
AclWI GGATC 2 cut(s) 616, 701
AcsI RAATTY 5 cut(s) 89, 98, 188, 642, 853
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 549
AflII CTTAAG 1 cut(s) 862
AgsI TTSAA 5 cut(s) 97, 187, 472, 814, 1026
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 4 cut(s) 9, 20, 572, 928
AluI AGCT 4 cut(s) 9, 20, 572, 928
Alw21I GWGCWC 2 cut(s) 198, 574
AlwI GGATC 2 cut(s) 616, 701
AoxI GGCC 2 cut(s) 41, 827
ApeKI GCWGC 6 cut(s) 6, 177, 356, 869, 878, 944
ApoI RAATTY 5 cut(s) 89, 98, 188, 642, 853
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
Asp700I GAANNNNTTC 1 cut(s) 857
AspS9I GGNCC 2 cut(s) 51, 975
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 51, 975
BanII GRGCYC 1 cut(s) 574
BauI CACGAG 2 cut(s) 374, 567
BbsI GAAGAC 2 cut(s) 710, 918
Bbv12I GWGCWC 2 cut(s) 198, 574
BbvI GCAGC 6 cut(s) 18, 189, 368, 856, 865, 931
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 757, 841
BfaI CTAG 2 cut(s) 249, 959
BfrI CTTAAG 1 cut(s) 862
BisI GCNGC 7 cut(s) 7, 178, 322, 357, 870, 879, 945
BlsI GCNGC 7 cut(s) 8, 179, 323, 358, 871, 880, 946
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 2 cut(s) 51, 975
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 51, 975
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 8 cut(s) 235, 321, 397, 562, 808, 883, 905, 941
BpiI GAAGAC 2 cut(s) 710, 918
BplI GAGNNNNNCTC 2 cut(s) 353, 385
Bpu10I CCTNAGC 1 cut(s) 939
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse1I ACTGG 2 cut(s) 401, 978
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 3 cut(s) 370, 412, 823
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 61, 651
BseNI ACTGG 2 cut(s) 401, 978
BseRI GAGGAG 4 cut(s) 64, 105, 108, 123
BseXI GCAGC 6 cut(s) 18, 189, 368, 856, 865, 931
BseYI CCCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 43, 829
BsiHKAI GWGCWC 2 cut(s) 198, 574
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 681
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 43, 829
Bsp1286I GDGCHC 2 cut(s) 198, 574
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 6 cut(s) 430, 608, 706, 757, 841, 961
BspACI CCGC 4 cut(s) 128, 319, 322, 395
BspANI GGCC 2 cut(s) 43, 829
BspCNI CTCAG 2 cut(s) 60, 650
BspFNI CGCG 1 cut(s) 324
BspPI GGATC 2 cut(s) 616, 701
BspTI CTTAAG 1 cut(s) 862
BsrDI GCAATG 1 cut(s) 624
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 2 cut(s) 401, 978
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 6 cut(s) 430, 608, 706, 757, 841, 961
BssSI CACGAG 2 cut(s) 374, 567
Bst2BI CACGAG 2 cut(s) 374, 567
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 917
Bst6I CTCTTC 4 cut(s) 61, 67, 73, 469
BstAFI CTTAAG 1 cut(s) 862
BstAPI GCANNNNNTGC 1 cut(s) 878
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 3 cut(s) 266, 930, 1005
BstDEI CTNAG 5 cut(s) 47, 559, 637, 803, 939
BstF5I GGATG 3 cut(s) 370, 412, 823
BstFNI CGCG 1 cut(s) 324
BstKTI GATC 6 cut(s) 433, 611, 709, 760, 844, 964
BstMBI GATC 6 cut(s) 430, 608, 706, 757, 841, 961
BstMWI GCNNNNNNNGC 6 cut(s) 245, 318, 835, 875, 878, 944
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 6 cut(s) 18, 189, 368, 856, 865, 931
BstV2I GAAGAC 2 cut(s) 710, 918
BsuRI GGCC 2 cut(s) 43, 829
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 3 cut(s) 370, 412, 823
BtsIMutI CAGTG 3 cut(s) 408, 922, 985
Cac8I GCNNGC 3 cut(s) 266, 930, 1005
Cfr13I GGNCC 2 cut(s) 51, 975
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 517
CviAII CATG 3 cut(s) 108, 761, 839
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 5 cut(s) 47, 559, 637, 803, 939
DpnI GATC 6 cut(s) 432, 610, 708, 759, 843, 963
DpnII GATC 6 cut(s) 430, 608, 706, 757, 841, 961
Eam1104I CTCTTC 4 cut(s) 61, 67, 73, 469
EarI CTCTTC 4 cut(s) 61, 67, 73, 469
EciI GGCGGA 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 51, 975
Eco53kI GAGCTC 1 cut(s) 572
EcoICRI GAGCTC 1 cut(s) 572
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 574
FaeI CATG 3 cut(s) 111, 764, 842
FaqI GGGAC 1 cut(s) 681
FatI CATG 3 cut(s) 107, 760, 838
FbaI TGATCA 2 cut(s) 757, 841
Fnu4HI GCNGC 7 cut(s) 7, 178, 322, 357, 870, 879, 945
FokI GGATG 3 cut(s) 377, 419, 830
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 7 cut(s) 7, 178, 322, 357, 870, 879, 945
FspBI CTAG 2 cut(s) 249, 959
GluI GCNGC 7 cut(s) 7, 178, 322, 357, 870, 879, 945
GsaI CCCAGC 1 cut(s) 13
HaeIII GGCC 2 cut(s) 43, 829
HapII CCGG 1 cut(s) 482
HgaI GACGC 1 cut(s) 212
Hin1II CATG 3 cut(s) 111, 764, 842
HinfI GANTC 7 cut(s) 212, 222, 258, 368, 531, 752, 799
HpaII CCGG 1 cut(s) 482
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 5 cut(s) 286, 536, 640, 648, 757
Hpy188III TCNNGA 5 cut(s) 49, 209, 219, 606, 704
Hpy99I CGWCG 3 cut(s) 176, 206, 481
HpyAV CCTTC 3 cut(s) 93, 132, 808
HpyCH4III ACNGT 1 cut(s) 917
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 7 cut(s) 356, 617, 764, 872, 896, 932, 1007
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 318, 835, 875, 878, 944
HpyF3I CTNAG 5 cut(s) 47, 559, 637, 803, 939
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 3 cut(s) 111, 764, 842
Ksp22I TGATCA 2 cut(s) 757, 841
Kzo9I GATC 6 cut(s) 430, 608, 706, 757, 841, 961
LmnI GCTCC 2 cut(s) 17, 201
Lsp1109I GCAGC 6 cut(s) 18, 189, 368, 856, 865, 931
LweI GCATC 8 cut(s) 235, 321, 397, 562, 808, 883, 905, 941
MaeI CTAG 2 cut(s) 249, 959
MaeII ACGT 1 cut(s) 171
MalI GATC 6 cut(s) 432, 610, 708, 759, 843, 963
MboI GATC 6 cut(s) 430, 608, 706, 757, 841, 961
MhlI GDGCHC 2 cut(s) 198, 574
MluCI AATT 8 cut(s) 89, 98, 188, 508, 642, 808, 853, 985
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 2 cut(s) 189, 474
Mph1103I ATGCAT 1 cut(s) 898
MroXI GAANNNNTTC 1 cut(s) 857
MseI TTAA 2 cut(s) 863, 984
MspA1I CMGCKG 1 cut(s) 9
MspCI CTTAAG 1 cut(s) 862
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 6 cut(s) 245, 318, 835, 875, 878, 944
NdeII GATC 6 cut(s) 430, 608, 706, 757, 841, 961
NlaIII CATG 3 cut(s) 111, 764, 842
NsiI ATGCAT 1 cut(s) 898
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 198, 207
PctI GAATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 857
PfeI GAWTC 6 cut(s) 212, 222, 258, 531, 752, 799
PkrI GCNGC 7 cut(s) 8, 179, 323, 358, 871, 880, 946
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PpuMI RGGWCCY 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 574
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 9
PspGI CCWGG 1 cut(s) 38
PspPI GGNCC 2 cut(s) 51, 975
PspPPI RGGWCCY 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
SacI GAGCTC 1 cut(s) 574
SaqAI TTAA 2 cut(s) 863, 984
SatI GCNGC 7 cut(s) 7, 178, 322, 357, 870, 879, 945
Sau3AI GATC 6 cut(s) 430, 608, 706, 757, 841, 961
Sau96I GGNCC 2 cut(s) 51, 975
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 2 cut(s) 198, 574
SetI ASST 8 cut(s) 11, 22, 56, 174, 233, 491, 574, 930
SfaNI GCATC 8 cut(s) 235, 321, 397, 562, 808, 883, 905, 941
SinI GGWCC 2 cut(s) 51, 975
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
Sse9I AATT 8 cut(s) 89, 98, 188, 508, 642, 808, 853, 985
SsiI CCGC 4 cut(s) 128, 319, 322, 395
SspMI CTAG 2 cut(s) 249, 959
SstI GAGCTC 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 917
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 210
TasI AATT 8 cut(s) 89, 98, 188, 508, 642, 808, 853, 985
TatI WGTACW 1 cut(s) 516
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 6 cut(s) 212, 222, 258, 531, 752, 799
Tru1I TTAA 2 cut(s) 863, 984
Tru9I TTAA 2 cut(s) 863, 984
TscAI CASTG 3 cut(s) 408, 922, 985
TseI GCWGC 6 cut(s) 6, 177, 356, 869, 878, 944
TspDTI ATGAA 4 cut(s) 96, 456, 877, 924
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 3 cut(s) 408, 922, 985
Vha464I CTTAAG 1 cut(s) 862
VpaK11BI GGWCC 2 cut(s) 51, 975
XapI RAATTY 5 cut(s) 89, 98, 188, 642, 853
XmnI GAANNNNTTC 1 cut(s) 857
XspI CTAG 2 cut(s) 249, 959
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.