RLG00000030205

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0009711
Physical Location & Seq
Reverse (-)
57521790 .. 57527175
5386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030205

Sequence Viewer

Length: 1278 bp
ATGAGCAGCTGGGTTGGAGCTTCTTCTCCATGGCCTCTCAGGACCTCTTCCTCTTCCTCCTCCTATCCTTCCAAACTCTTCAAATTCCATTCATGTCCTCCTCCTTCTCCGTTTCGTCCTCTCTGCCTCGCCGCCCAATCCAACCACGTCGGCAGCGACTTCAAATTCGTGCTCCACGACGCTCTCGATTCTTCTGGAATCCTCACCTCTCACGCCAGAGATGCTAGGGAGGGATTCTGCTCGCAAATCGGCAAAATGTCTGATATAGAGAGGCAAACCAGCATTAGCATCAACCGCCGCGTTGATTTAGGGAGAACTGCTCTTTATATTGCAGCAGAGGATGACTCCCTCGTGTCGCATTCGTCCGTTCCGCTTCCTGTGGATGCTTTTATCAGTCGATTTGATGATCTTTCTATGGACTATTGTTCTCACTACAACTCTTCATTGAAATCGTCGCCCGAGAGGTTGTTGGAGAGTTTGGAAAATTATTTGTACATACACAAGGGATTCCGAAGAACCAACGCAAGGCATCTCCTTGAAACACGAGCTCTATATCTCCATTCAGTTTTGACACATCGTTCAGGATCAACTGCAATGCTATCACTAATATACTCGGAAATCCTGAAAATGCTTCGCTTATGGGGACTTTTGGATTTTGATGTGGAGATATTCTTTCCTCACGATCCTCATAGTCTTCCCAGAGGCTATCCTAAAAAGAAAAGCAAGGAATCTGATCATGCACACATAATGACATCACAAGCTCTTTTGGTTGAGATTCTAAGAAATTTGAAGGATGCTTTCTGGCCTTTTCAGCATGATCAATCAGGGAACTTATTCTTAAGGGCTGCACGGGCTGCTAACTTCATTGATGCATCAAACGTTGATGAAGACAGTGGATTTCAGCTTGCATCTGCTAAGGCTGCTCAACATAGGCTAGATCGTGGTGTTTGGACTAGTGTAAATTTTGGGGATATGAGGCGTGCATTATCTGCTTGCGAACGTCTTATTCTCCTCGAAGCTGATTCAAAGGAATTGAGAGATTATAGCATTCTTCTCTACCATTGTGGATTTTATGAGCAATCACTTGAATTTTTAAAGTTGTATCAGGACACAAAGACTCGCCCACAACTTAGGCGATCATCTAATTCATCAACCGATTTAGAGGAAGATGCTGTAGAGAAGTTGATGATACGCCTTAAACTAATTTTGATGGAGGATGGTTGGAGCAGGCCTTCATATGTAAGAAACTTTCTTGGTAGCAGCTCTGATCCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transglut_core2

Protein Analysis

426

Amino Acids

48.33

Weight (kDa)

7.0

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 136 - 212 4.9e-07 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 300
AciI CCGC 4 cut(s) 132, 295, 298, 371
AclI AACGTT 1 cut(s) 879
AclWI GGATC 3 cut(s) 592, 677, 1262
AcsI RAATTY 5 cut(s) 83, 164, 784, 961, 1088
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 1 cut(s) 525
AflII CTTAAG 1 cut(s) 838
AgsI TTSAA 7 cut(s) 82, 163, 448, 539, 790, 1026, 1088
AhlI ACTAGT 1 cut(s) 953
AjiI CACGTC 1 cut(s) 148
AluBI AGCT 7 cut(s) 9, 20, 548, 761, 904, 1019, 1263
AluI AGCT 7 cut(s) 9, 20, 548, 761, 904, 1019, 1263
Alw21I GWGCWC 2 cut(s) 174, 550
AlwI GGATC 3 cut(s) 592, 677, 1262
Ama87I CYCGRG 1 cut(s) 458
AoxI GGCC 3 cut(s) 32, 803, 1229
ApeKI GCWGC 7 cut(s) 6, 153, 332, 845, 854, 920, 1260
ApoI RAATTY 5 cut(s) 83, 164, 784, 961, 1088
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp700I GAANNNNTTC 1 cut(s) 833
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 2 cut(s) 350, 543
BbsI GAAGAC 2 cut(s) 686, 894
Bbv12I GWGCWC 2 cut(s) 174, 550
BbvI GCAGC 7 cut(s) 18, 165, 344, 832, 841, 907, 1272
BccI CCATC 2 cut(s) 1204, 1211
BclI TGATCA 2 cut(s) 733, 817
BcuI ACTAGT 1 cut(s) 953
BfaI CTAG 3 cut(s) 225, 935, 954
BfmI CTRYAG 1 cut(s) 1173
BfrI CTTAAG 1 cut(s) 838
BisI GCNGC 9 cut(s) 7, 132, 154, 298, 333, 846, 855, 921, 1261
BlsI GCNGC 9 cut(s) 8, 133, 155, 299, 334, 847, 856, 922, 1262
Bme18I GGWCC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 42
BmsI GCATC 9 cut(s) 211, 297, 373, 538, 784, 859, 881, 917, 1159
BpiI GAAGAC 2 cut(s) 686, 894
BplI GAGNNNNNCTC 4 cut(s) 304, 336, 329, 361
Bpu10I CCTNAGC 1 cut(s) 915
BsaJI CCNNGG 2 cut(s) 29, 1271
Bsc4I CCNNNNNNNGG 1 cut(s) 525
Bse3DI GCAATG 1 cut(s) 600
BseDI CCNNGG 2 cut(s) 29, 1271
BseGI GGATG 4 cut(s) 346, 388, 799, 1222
BseLI CCNNNNNNNGG 1 cut(s) 525
BseMI GCAATG 1 cut(s) 600
BseMII CTCAG 1 cut(s) 52
BseRI GAGGAG 3 cut(s) 49, 90, 1001
BseXI GCAGC 7 cut(s) 18, 165, 344, 832, 841, 907, 1272
BseYI CCCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 831
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 3 cut(s) 34, 805, 1231
BsiHKAI GWGCWC 2 cut(s) 174, 550
BsiHKCI CYCGRG 1 cut(s) 458
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 657
BsmI GAATGC 2 cut(s) 358, 1047
BsnI GGCC 3 cut(s) 34, 805, 1231
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 174, 550
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 8 cut(s) 406, 584, 682, 733, 817, 937, 1136, 1267
Bsp19I CCATGG 2 cut(s) 29, 1271
BspACI CCGC 4 cut(s) 132, 295, 298, 371
BspANI GGCC 3 cut(s) 34, 805, 1231
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 300
BspPI GGATC 3 cut(s) 592, 677, 1262
BspTI CTTAAG 1 cut(s) 838
BsrDI GCAATG 1 cut(s) 600
BsrGI TGTACA 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 29, 1271
BssMI GATC 8 cut(s) 406, 584, 682, 733, 817, 937, 1136, 1267
BssSI CACGAG 2 cut(s) 350, 543
BssT1I CCWWGG 2 cut(s) 29, 1271
Bst2BI CACGAG 2 cut(s) 350, 543
Bst4CI ACNGT 1 cut(s) 893
Bst6I CTCTTC 4 cut(s) 52, 58, 83, 445
BstAFI CTTAAG 1 cut(s) 838
BstAPI GCANNNNNTGC 2 cut(s) 854, 989
BstAUI TGTACA 1 cut(s) 492
BstC8I GCNNGC 5 cut(s) 242, 906, 981, 994, 1229
BstDEI CTNAG 4 cut(s) 38, 779, 915, 1130
BstDSI CCRYGG 2 cut(s) 29, 1271
BstF5I GGATG 4 cut(s) 346, 388, 799, 1222
BstFNI CGCG 1 cut(s) 300
BstKTI GATC 8 cut(s) 409, 587, 685, 736, 820, 940, 1139, 1270
BstMBI GATC 8 cut(s) 406, 584, 682, 733, 817, 937, 1136, 1267
BstMWI GCNNNNNNNGC 7 cut(s) 221, 294, 811, 851, 854, 920, 989
BstSFI CTRYAG 1 cut(s) 1173
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 7 cut(s) 18, 165, 344, 832, 841, 907, 1272
BstV2I GAAGAC 2 cut(s) 686, 894
BsuRI GGCC 3 cut(s) 34, 805, 1231
BtgI CCRYGG 2 cut(s) 29, 1271
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 4 cut(s) 346, 388, 799, 1222
BtsIMutI CAGTG 1 cut(s) 898
Cac8I GCNNGC 5 cut(s) 242, 906, 981, 994, 1229
Cfr13I GGNCC 1 cut(s) 42
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 493
CviAII CATG 5 cut(s) 30, 93, 737, 815, 1272
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 4 cut(s) 38, 779, 915, 1130
DpnI GATC 8 cut(s) 408, 586, 684, 735, 819, 939, 1138, 1269
DpnII GATC 8 cut(s) 406, 584, 682, 733, 817, 937, 1136, 1267
DraI TTTAAA 1 cut(s) 1095
Eam1104I CTCTTC 4 cut(s) 52, 58, 83, 445
EarI CTCTTC 4 cut(s) 52, 58, 83, 445
Ecl136II GAGCTC 1 cut(s) 548
Eco130I CCWWGG 2 cut(s) 29, 1271
Eco147I AGGCCT 1 cut(s) 1231
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 42
EcoT14I CCWWGG 2 cut(s) 29, 1271
EcoT22I ATGCAT 1 cut(s) 874
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 2 cut(s) 29, 1271
FaeI CATG 5 cut(s) 33, 96, 740, 818, 1275
FaqI GGGAC 1 cut(s) 657
FatI CATG 5 cut(s) 29, 92, 736, 814, 1271
FauNDI CATATG 1 cut(s) 1237
FbaI TGATCA 2 cut(s) 733, 817
Fnu4HI GCNGC 9 cut(s) 7, 132, 154, 298, 333, 846, 855, 921, 1261
FokI GGATG 4 cut(s) 353, 395, 806, 1229
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 9 cut(s) 7, 132, 154, 298, 333, 846, 855, 921, 1261
FspBI CTAG 3 cut(s) 225, 935, 954
GluI GCNGC 9 cut(s) 7, 132, 154, 298, 333, 846, 855, 921, 1261
GsaI CCCAGC 1 cut(s) 13
HaeIII GGCC 3 cut(s) 34, 805, 1231
HgaI GACGC 1 cut(s) 188
Hin1II CATG 5 cut(s) 33, 96, 740, 818, 1275
HinfI GANTC 9 cut(s) 188, 198, 234, 344, 507, 728, 775, 1022, 1117
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 5 cut(s) 262, 512, 616, 733, 1267
Hpy188III TCNNGA 7 cut(s) 40, 185, 195, 582, 622, 680, 1106
Hpy99I CGWCG 3 cut(s) 152, 182, 457
HpyAV CCTTC 4 cut(s) 78, 114, 784, 1242
HpyCH4III ACNGT 1 cut(s) 893
HpyCH4IV ACGT 3 cut(s) 147, 879, 1000
HpyCH4V TGCA 7 cut(s) 332, 593, 740, 848, 872, 908, 983
HpyF10VI GCNNNNNNNGC 7 cut(s) 221, 294, 811, 851, 854, 920, 989
HpyF3I CTNAG 4 cut(s) 38, 779, 915, 1130
HpySE526I ACGT 3 cut(s) 147, 879, 1000
Hsp92II CATG 5 cut(s) 33, 96, 740, 818, 1275
Ksp22I TGATCA 2 cut(s) 733, 817
Kzo9I GATC 8 cut(s) 406, 584, 682, 733, 817, 937, 1136, 1267
LmnI GCTCC 3 cut(s) 17, 177, 1224
Lsp1109I GCAGC 7 cut(s) 18, 165, 344, 832, 841, 907, 1272
LweI GCATC 9 cut(s) 211, 297, 373, 538, 784, 859, 881, 917, 1159
MaeI CTAG 3 cut(s) 225, 935, 954
MaeII ACGT 3 cut(s) 147, 879, 1000
MalI GATC 8 cut(s) 408, 586, 684, 735, 819, 939, 1138, 1269
MboI GATC 8 cut(s) 406, 584, 682, 733, 817, 937, 1136, 1267
MhlI GDGCHC 2 cut(s) 174, 550
MluCI AATT 9 cut(s) 83, 164, 484, 784, 961, 1031, 1088, 1144, 1203
MlyI GAGTC 2 cut(s) 338, 1111
MmeI TCCRAC 3 cut(s) 165, 450, 1202
Mph1103I ATGCAT 1 cut(s) 874
MroXI GAANNNNTTC 1 cut(s) 833
MseI TTAA 3 cut(s) 839, 1094, 1197
MspA1I CMGCKG 1 cut(s) 9
MspCI CTTAAG 1 cut(s) 838
Mva1269I GAATGC 2 cut(s) 358, 1047
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 7 cut(s) 221, 294, 811, 851, 854, 920, 989
NcoI CCATGG 2 cut(s) 29, 1271
NdeI CATATG 1 cut(s) 1237
NdeII GATC 8 cut(s) 406, 584, 682, 733, 817, 937, 1136, 1267
NlaIII CATG 5 cut(s) 33, 96, 740, 818, 1275
NsiI ATGCAT 1 cut(s) 874
PceI AGGCCT 1 cut(s) 1231
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 174, 183
PctI GAATGC 2 cut(s) 358, 1047
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 7 cut(s) 188, 198, 234, 507, 728, 775, 1022
PkrI GCNGC 9 cut(s) 8, 133, 155, 299, 334, 847, 856, 922, 1262
PleI GAGTC 2 cut(s) 338, 1111
PpsI GAGTC 2 cut(s) 338, 1111
PpuMI RGGWCCY 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 550
Psp1406I AACGTT 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 42
PspPPI RGGWCCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SacI GAGCTC 1 cut(s) 550
SaqAI TTAA 3 cut(s) 839, 1094, 1197
SatI GCNGC 9 cut(s) 7, 132, 154, 298, 333, 846, 855, 921, 1261
Sau3AI GATC 8 cut(s) 406, 584, 682, 733, 817, 937, 1136, 1267
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 2 cut(s) 338, 1111
SduI GDGCHC 2 cut(s) 174, 550
SfaNI GCATC 9 cut(s) 211, 297, 373, 538, 784, 859, 881, 917, 1159
SfcI CTRYAG 1 cut(s) 1173
SinI GGWCC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
SpeI ACTAGT 1 cut(s) 953
Sse9I AATT 9 cut(s) 83, 164, 484, 784, 961, 1031, 1088, 1144, 1203
SseBI AGGCCT 1 cut(s) 1231
SsiI CCGC 4 cut(s) 132, 295, 298, 371
SspMI CTAG 3 cut(s) 225, 935, 954
SstI GAGCTC 1 cut(s) 550
StuI AGGCCT 1 cut(s) 1231
StyI CCWWGG 2 cut(s) 29, 1271
TaaI ACNGT 1 cut(s) 893
TaiI ACGT 3 cut(s) 150, 882, 1003
TaqI TCGA 3 cut(s) 186, 397, 1014
TasI AATT 9 cut(s) 83, 164, 484, 784, 961, 1031, 1088, 1144, 1203
TatI WGTACW 1 cut(s) 492
TauI GCSGC 2 cut(s) 134, 300
TfiI GAWTC 7 cut(s) 188, 198, 234, 507, 728, 775, 1022
Tru1I TTAA 3 cut(s) 839, 1094, 1197
Tru9I TTAA 3 cut(s) 839, 1094, 1197
TscAI CASTG 1 cut(s) 898
TseI GCWGC 7 cut(s) 6, 153, 332, 845, 854, 920, 1260
TspDTI ATGAA 6 cut(s) 81, 432, 853, 900, 1137, 1224
TspGWI ACGGA 2 cut(s) 99, 355
TspRI CASTG 1 cut(s) 898
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 5 cut(s) 83, 164, 784, 961, 1088
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 3 cut(s) 225, 935, 954
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.