Rh1CG063100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009711
Physical Location & Seq
Forward (+)
12491078 .. 12496774
5697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG063100.1

Sequence Viewer

Length: 1068 bp
ATGTTAAAAAACACCACTGACTCGCTTCTCTCTTCGCTCTCTACAAACAAAACGATGAGCAGCTGGGTTGGAGCTTCTTCTTCTTCTTCTCCCTGGCCTCTCAGGACCTCTTCCTCTTCCTCTTCCTCCTCCTATCCTTCCAAATTCTTCAAATTCCATTCATGTCCTCCTCCTCCTTCTCCGCCTCCTCTGTTTCGTCCTCTCTGCCTCGCCCAATCCAACCACGTCGGCAGCGACTTCAAATTCGTGCTCCACGACGCTCTCGATTCTTCTGGAATCCTCACCTCTCACGCCAGAGATGCTAGGGAGGGATTCTGCTCGCAAATCGGCAAAATGTCTGATATAGAGAGGCAAACCAGCATTAGCATCAACCGCCGCGTTGATTTAGGGAAAACTGCTCTTTATATTGCAGCAGAGGATGACTCCCTCGTGTCGCATTCGTCCGTTCCGCTTCCAGTGGATGCTTTTATCAGTAGATTTGATGATCTTTCTATGGACTATTGTTCTCACTACAACTCTTCATTGAAATCGTCGCCGGAGAGGTTGTTGGAGAGTTTGGAAAATTATTTGTACATACACAAGGGATTCCGAAGAACCAACGCAAGGCATCTCTTAGAAACACGAGCTCTATATCTCCATTCGGTTTTGACACATCGTTCAGGATCAACTGCAATGCTATCACTAATATACTCAGAAATTCTGAAAATGCTTCGCTTATGGGGACTTTTGGATTTTGATGTGGAGATATTCTTTCCTCACGATCCTCATAGTCTTCCCAGAGGCTATCCCAAAAAGAAAAGCAAGGAATCTGATCATGCACACATAATGACATCACAAGCCCTTTTGGTTGAGATTCTAAGCAATTTGAAGGATGCTTTCTGGCCTTTTCAGCATGATCAATCAGGGAATTTATTCTTAAGGGCTGCACGGGCTGCTAACTTCATTGATGCATCAAATGTTGATGAAGACAGGTATTTCAATCTGATGATACTTAATTACTTTCCAGTTCTATGGGCATTTCCTATAAATAATTGTGTTTATTTTTCTACTTATAGAATAATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transglut_core2

Protein Analysis

355

Amino Acids

40.18

Weight (kDa)

7.74

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 162 - 238 3.6e-07 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 378
AciI CCGC 4 cut(s) 182, 373, 376, 449
AclWI GGATC 2 cut(s) 670, 755
AcsI RAATTY 5 cut(s) 143, 152, 242, 696, 907
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 603
AflII CTTAAG 1 cut(s) 916
AgsI TTSAA 5 cut(s) 151, 241, 526, 868, 979
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 3 cut(s) 63, 74, 626
AluI AGCT 3 cut(s) 63, 74, 626
Alw21I GWGCWC 2 cut(s) 252, 628
AlwI GGATC 2 cut(s) 670, 755
AoxI GGCC 2 cut(s) 95, 881
ApeKI GCWGC 5 cut(s) 60, 231, 410, 923, 932
ApoI RAATTY 5 cut(s) 143, 152, 242, 696, 907
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
Asp700I GAANNNNTTC 1 cut(s) 911
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 105
BanII GRGCYC 1 cut(s) 628
BauI CACGAG 2 cut(s) 428, 621
BbsI GAAGAC 2 cut(s) 764, 972
Bbv12I GWGCWC 2 cut(s) 252, 628
BbvI GCAGC 5 cut(s) 72, 243, 422, 910, 919
BciT130I CCWGG 1 cut(s) 94
BclI TGATCA 2 cut(s) 811, 895
BfaI CTAG 2 cut(s) 303, 1066
BfrI CTTAAG 1 cut(s) 916
BisI GCNGC 6 cut(s) 61, 232, 376, 411, 924, 933
BlsI GCNGC 6 cut(s) 62, 233, 377, 412, 925, 934
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 7 cut(s) 289, 375, 451, 616, 862, 937, 959
BpiI GAAGAC 2 cut(s) 764, 972
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BsaJI CCNNGG 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 1 cut(s) 603
Bse1I ACTGG 2 cut(s) 455, 1004
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 3 cut(s) 424, 466, 877
BseLI CCNNNNNNNGG 1 cut(s) 603
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 2 cut(s) 115, 705
BseNI ACTGG 2 cut(s) 455, 1004
BseRI GAGGAG 4 cut(s) 118, 159, 162, 177
BseXI GCAGC 5 cut(s) 72, 243, 422, 910, 919
BseYI CCCAGC 1 cut(s) 63
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 97, 883
BsiHKAI GWGCWC 2 cut(s) 252, 628
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 1 cut(s) 735
BslI CCNNNNNNNGG 1 cut(s) 603
BsmFI GGGAC 1 cut(s) 735
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 2 cut(s) 97, 883
Bsp1286I GDGCHC 2 cut(s) 252, 628
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 5 cut(s) 484, 662, 760, 811, 895
BspACI CCGC 4 cut(s) 182, 373, 376, 449
BspANI GGCC 2 cut(s) 97, 883
BspCNI CTCAG 2 cut(s) 114, 704
BspFNI CGCG 1 cut(s) 378
BspPI GGATC 2 cut(s) 670, 755
BspTI CTTAAG 1 cut(s) 916
BsrDI GCAATG 1 cut(s) 678
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 2 cut(s) 455, 1004
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 5 cut(s) 484, 662, 760, 811, 895
BssSI CACGAG 2 cut(s) 428, 621
Bst2BI CACGAG 2 cut(s) 428, 621
Bst2UI CCWGG 1 cut(s) 94
Bst6I CTCTTC 5 cut(s) 37, 115, 121, 127, 523
BstAFI CTTAAG 1 cut(s) 916
BstAPI GCANNNNNTGC 1 cut(s) 932
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 4 cut(s) 101, 613, 691, 857
BstF5I GGATG 3 cut(s) 424, 466, 877
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 5 cut(s) 487, 665, 763, 814, 898
BstMBI GATC 5 cut(s) 484, 662, 760, 811, 895
BstMWI GCNNNNNNNGC 5 cut(s) 299, 372, 889, 929, 932
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 5 cut(s) 72, 243, 422, 910, 919
BstV2I GAAGAC 2 cut(s) 764, 972
BstXI CCANNNNNNTGG 1 cut(s) 1011
BsuRI GGCC 2 cut(s) 97, 883
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 3 cut(s) 424, 466, 877
BtsIMutI CAGTG 2 cut(s) 15, 462
Cac8I GCNNGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 105
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 571
CviAII CATG 3 cut(s) 162, 815, 893
CviJI RGCY 9 cut(s) 63, 74, 97, 626, 783, 839, 883, 923, 932
CviKI_1 RGCY 9 cut(s) 63, 74, 97, 626, 783, 839, 883, 923, 932
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 4 cut(s) 101, 613, 691, 857
DpnI GATC 5 cut(s) 486, 664, 762, 813, 897
DpnII GATC 5 cut(s) 484, 662, 760, 811, 895
Eam1104I CTCTTC 5 cut(s) 37, 115, 121, 127, 523
EarI CTCTTC 5 cut(s) 37, 115, 121, 127, 523
EciI GGCGGA 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 626
Eco24I GRGCYC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 626
EcoICRI GAGCTC 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 952
EcoT38I GRGCYC 1 cut(s) 628
FaeI CATG 3 cut(s) 165, 818, 896
FaqI GGGAC 1 cut(s) 735
FatI CATG 3 cut(s) 161, 814, 892
FbaI TGATCA 2 cut(s) 811, 895
Fnu4HI GCNGC 6 cut(s) 61, 232, 376, 411, 924, 933
FokI GGATG 3 cut(s) 431, 473, 884
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 6 cut(s) 61, 232, 376, 411, 924, 933
FspBI CTAG 2 cut(s) 303, 1066
GluI GCNGC 6 cut(s) 61, 232, 376, 411, 924, 933
GsaI CCCAGC 1 cut(s) 67
HaeIII GGCC 2 cut(s) 97, 883
HapII CCGG 1 cut(s) 536
HgaI GACGC 1 cut(s) 266
Hin1II CATG 3 cut(s) 165, 818, 896
HinfI GANTC 8 cut(s) 20, 266, 276, 312, 422, 585, 806, 853
HpaII CCGG 1 cut(s) 536
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 6 cut(s) 340, 590, 694, 702, 811, 984
Hpy188III TCNNGA 5 cut(s) 103, 263, 273, 660, 758
Hpy99I CGWCG 3 cut(s) 230, 260, 535
HpyAV CCTTC 3 cut(s) 147, 186, 862
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 5 cut(s) 410, 671, 818, 926, 950
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 372, 889, 929, 932
HpyF3I CTNAG 4 cut(s) 101, 613, 691, 857
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 165, 818, 896
Ksp22I TGATCA 2 cut(s) 811, 895
Kzo9I GATC 5 cut(s) 484, 662, 760, 811, 895
LmnI GCTCC 2 cut(s) 71, 255
Lsp1109I GCAGC 5 cut(s) 72, 243, 422, 910, 919
LweI GCATC 7 cut(s) 289, 375, 451, 616, 862, 937, 959
MaeI CTAG 2 cut(s) 303, 1066
MaeII ACGT 1 cut(s) 225
MalI GATC 5 cut(s) 486, 664, 762, 813, 897
MboI GATC 5 cut(s) 484, 662, 760, 811, 895
MhlI GDGCHC 2 cut(s) 252, 628
MlyI GAGTC 2 cut(s) 14, 416
MmeI TCCRAC 3 cut(s) 49, 243, 528
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 1 cut(s) 911
MseI TTAA 3 cut(s) 5, 917, 993
MspA1I CMGCKG 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 916
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 5 cut(s) 299, 372, 889, 929, 932
NdeII GATC 5 cut(s) 484, 662, 760, 811, 895
NlaIII CATG 3 cut(s) 165, 818, 896
NsiI ATGCAT 1 cut(s) 952
PcsI WCGNNNNNNNCGW 3 cut(s) 231, 252, 261
PctI GAATGC 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 911
PfeI GAWTC 6 cut(s) 266, 276, 312, 585, 806, 853
PkrI GCNGC 6 cut(s) 62, 233, 377, 412, 925, 934
PleI GAGTC 2 cut(s) 14, 416
PpsI GAGTC 2 cut(s) 14, 416
PpuMI RGGWCCY 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 628
Psp5II RGGWCCY 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 1 cut(s) 92
PspPI GGNCC 1 cut(s) 105
PspPPI RGGWCCY 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SacI GAGCTC 1 cut(s) 628
SaqAI TTAA 3 cut(s) 5, 917, 993
SatI GCNGC 6 cut(s) 61, 232, 376, 411, 924, 933
Sau3AI GATC 5 cut(s) 484, 662, 760, 811, 895
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 2 cut(s) 14, 416
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 2 cut(s) 252, 628
SetI ASST 8 cut(s) 65, 76, 110, 228, 287, 545, 628, 974
SfaNI GCATC 7 cut(s) 289, 375, 451, 616, 862, 937, 959
SinI GGWCC 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 916
SmoI CTYRAG 1 cut(s) 916
SsiI CCGC 4 cut(s) 182, 373, 376, 449
SspMI CTAG 2 cut(s) 303, 1066
SstI GAGCTC 1 cut(s) 628
StyD4I CCNGG 1 cut(s) 92
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 264
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 6 cut(s) 266, 276, 312, 585, 806, 853
Tru1I TTAA 3 cut(s) 5, 917, 993
Tru9I TTAA 3 cut(s) 5, 917, 993
TscAI CASTG 2 cut(s) 22, 462
TseI GCWGC 5 cut(s) 60, 231, 410, 923, 932
TspDTI ATGAA 4 cut(s) 150, 510, 931, 978
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 2 cut(s) 22, 462
Vha464I CTTAAG 1 cut(s) 916
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 5 cut(s) 143, 152, 242, 696, 907
XmnI GAANNNNTTC 1 cut(s) 911
XspI CTAG 2 cut(s) 303, 1066
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.