Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002378

Physical Location & Seq

Genomic Coordinates Reverse (-)

35607389 .. 35610509

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1301500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTGAGGGACGAGTCGAGCTGCAACACCTACAACTATGGCGACGCCCTCTACTGGGACGCCCGCTACGTCCAAGAAGGTGGCTCCTTCGACTGGTACCAGCGCTACTCTTCCCTCCGCCCTTTCGTCCGCCACTTCATCCCCATCTCCTCTTCTGTTCTCATGGTCGGCTGCGGCAATGCCGTTATGTCCGAGGACATGGTCAAGGATGGATATGAAGACATAATGAACATTGACATTTCATCAGTGGCTATCGACATGATGATAAGCAAATATGAGCACATACCTCAGCTGAAATACATGCAAATGGATGTTAGAGATATGAGTTTCTTCCCAGATGATTCGTTTGACGGTGTCATTGATAAAGGAACTCTTGATTCACTGATGTGTGGTAACGATGCTCCAATTAGTGCTGCTCAAATGTTAGGGGAAGTGAGCAGGCTTCTTAAACCTGGAGGGATCTATATGTTGATAACGTACGGTGATCCTAAAGTAAGAATGCCTCATTTGAGACGGCCAGTGTACAACTGGAAAGTTTGTTTGTACACTATACCCAGACCAGGATTCCAAACGCCTGAAGGCTGTGGTTTGTCATCGAAATCAGATCTGGAACCCGTTCCTATAACCAAGAAGGGCTTACTTCCAGCTGATTTTGTTTTGGAAGATCCGGATTGTCACTTCATATATGTGTGTAAAAAGGACGATGCGGAGCTAGGTAATCCATCAACTGATGGCTTGAGTCAATTGACAGTTGATGACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

255

Amino Acids

28.61

Weight (kDa)

4.6

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	52 - 161	1.4e-09	Methyltransferase domain
Methyltransf_25	PF13649	53 - 153	1.5e-11	Methyltransferase domain
Methyltransf_11	PF08241	54 - 156	5.1e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60910 AT3G60910
fragaria_vesca	FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670
malus_domestica	MD02G1301500.v1.1 MD07G1022400.v1.1
prunus_persica	Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1
pyrus_communis	pycom02g25330 pycom02g25360
rosa_chinensis	RchiOBHm_Chr1g0318081 RchiOBHm_Chr1g0318181
rosa_laevigata	RLG00000030554
rosa_multiflora	Rmu_sc0005106.1_g000005
rosa_roxburghii	Rroxscaffold_4G00329520 Rroxscaffold_4G00329750 Rroxscaffold_4G00329790
rosa_rugosa	Rorug01G0019700 Rorug01G0019700 Rorug01G0019700
rosa_samantha	Rh1AG030800 Rh1AG031400 Rh1BG027000 Rh1CG029600 Rh1CG030100 Rh1DG039800 Rh1DG040700
rosa_wichuraiana	Rw1G002430 Rw1G002470 Rw1G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	667
AciI	CCGC	5 cut(s)	64, 118, 130, 174, 707
AclWI	GGATC	3 cut(s)	467, 479, 659
AcoI	YGGCCR	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	2 cut(s)	45, 60
AfaI	GTAC	4 cut(s)	98, 479, 524, 545
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	4 cut(s)	54, 55, 93, 560
AjnI	CCWGG	2 cut(s)	451, 559
AleI	CACNNNNGTG	1 cut(s)	385
AluBI	AGCT	4 cut(s)	21, 292, 647, 712
AluI	AGCT	4 cut(s)	21, 292, 647, 712
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	505
AlwI	GGATC	3 cut(s)	467, 479, 659
Aor13HI	TCCGGA	1 cut(s)	667
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	515
ApeKI	GCWGC	3 cut(s)	21, 171, 413
Asp700I	GAANNNNTTC	1 cut(s)	615
Asp718I	GGTACC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	8, 158, 400
BccI	CCATC	4 cut(s)	152, 203, 725, 730
BceAI	ACGGC	2 cut(s)	167, 530
BciT130I	CCWGG	2 cut(s)	453, 561
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	1 cut(s)	713
BfoI	RGCGCY	1 cut(s)	106
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	4 cut(s)	22, 172, 175, 414
BlsI	GCNGC	4 cut(s)	23, 173, 176, 415
Bme1390I	CCNGG	2 cut(s)	453, 561
BmiI	GGNNCC	3 cut(s)	85, 98, 612
BmrFI	CCNGG	2 cut(s)	453, 561
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	388, 694
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	757
BsaHI	GRCGYC	2 cut(s)	45, 60
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 55, 93, 560
Bse1I	ACTGG	4 cut(s)	59, 98, 518, 533
Bse3DI	GCAATG	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	667
BseBI	CCWGG	2 cut(s)	453, 561
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	138, 214, 316
BseLI	CCNNNNNNNGG	4 cut(s)	54, 55, 93, 560
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	4 cut(s)	59, 98, 518, 533
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	8, 158, 400
BshFI	GGCC	1 cut(s)	517
BshNI	GGYRCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	668
BsiWI	CGTACG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	23, 71
BslI	CCNNNNNNNGG	4 cut(s)	54, 55, 93, 560
BsmAI	GTCTC	1 cut(s)	505
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	2 cut(s)	23, 71
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	667
Bsp1407I	TGTACA	2 cut(s)	522, 543
Bsp143I	GATC	4 cut(s)	459, 484, 604, 664
BspACI	CCGC	5 cut(s)	64, 118, 130, 174, 707
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	1 cut(s)	301
BspEI	TCCGGA	1 cut(s)	667
BspLI	GGNNCC	3 cut(s)	85, 98, 612
BspPI	GGATC	3 cut(s)	467, 479, 659
BspT107I	GGYRCC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	184
BsrGI	TGTACA	2 cut(s)	522, 543
BsrI	ACTGG	4 cut(s)	59, 98, 518, 533
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	4 cut(s)	459, 484, 604, 664
BssNI	GRCGYC	2 cut(s)	45, 60
Bst2UI	CCWGG	2 cut(s)	453, 561
Bst4CI	ACNGT	3 cut(s)	353, 482, 751
Bst6I	CTCTTC	2 cut(s)	115, 157
BstACI	GRCGYC	2 cut(s)	45, 60
BstAUI	TGTACA	2 cut(s)	522, 543
BstC8I	GCNNGC	2 cut(s)	64, 440
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	138, 214, 316
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	4 cut(s)	462, 487, 607, 667
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	4 cut(s)	459, 484, 604, 664
BstNI	CCWGG	2 cut(s)	453, 561
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	451, 559
BstV1I	GCAGC	3 cut(s)	8, 158, 400
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	3 cut(s)	459, 604, 664
BstXI	CCANNNNNNTGG	1 cut(s)	80
BstYI	RGATCY	3 cut(s)	459, 604, 664
BsuRI	GGCC	1 cut(s)	517
BtsCI	GGATG	3 cut(s)	138, 214, 316
BtsIMutI	CAGTG	3 cut(s)	252, 380, 525
Cac8I	GCNNGC	2 cut(s)	64, 440
CfoI	GCGC	1 cut(s)	105
CseI	GACGC	2 cut(s)	53, 68
Csp6I	GTAC	4 cut(s)	97, 478, 523, 544
CviAII	CATG	4 cut(s)	163, 199, 259, 301
CviQI	GTAC	4 cut(s)	97, 478, 523, 544
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	4 cut(s)	461, 486, 606, 666
DpnII	GATC	4 cut(s)	459, 484, 604, 664
EaeI	YGGCCR	1 cut(s)	515
Eam1104I	CTCTTC	2 cut(s)	115, 157
EarI	CTCTTC	2 cut(s)	115, 157
EciI	GGCGGA	2 cut(s)	107, 119
Eco47III	AGCGCT	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	451, 559
Esp3I	CGTCTC	1 cut(s)	505
FaeI	CATG	4 cut(s)	166, 202, 262, 304
FalI	AAGNNNNNCTT	4 cut(s)	357, 389, 620, 652
FaqI	GGGAC	2 cut(s)	23, 71
FatI	CATG	4 cut(s)	162, 198, 258, 300
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	4 cut(s)	22, 172, 175, 414
FokI	GGATG	3 cut(s)	125, 221, 323
Fsp4HI	GCNGC	4 cut(s)	22, 172, 175, 414
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	4 cut(s)	22, 172, 175, 414
GsuI	CTGGAG	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	1 cut(s)	668
HgaI	GACGC	2 cut(s)	53, 68
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	45, 60
Hin1II	CATG	4 cut(s)	166, 202, 262, 304
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	5 cut(s)	14, 341, 377, 564, 739
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	523, 546
Hpy188I	TCNGA	2 cut(s)	193, 604
Hpy188III	TCNNGA	3 cut(s)	374, 608, 668
Hpy8I	GTNNAC	2 cut(s)	523, 546
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	4 cut(s)	71, 97, 572, 625
HpyCH4III	ACNGT	3 cut(s)	353, 482, 751
HpyCH4IV	ACGT	2 cut(s)	69, 476
HpyCH4V	TGCA	2 cut(s)	24, 304
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	2 cut(s)	69, 476
Hsp92I	GRCGYC	2 cut(s)	45, 60
Hsp92II	CATG	4 cut(s)	166, 202, 262, 304
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	667
KpnI	GGTACC	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	459, 484, 604, 664
LmnI	GCTCC	3 cut(s)	89, 406, 709
Lsp1109I	GCAGC	3 cut(s)	8, 158, 400
LweI	GCATC	2 cut(s)	388, 694
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	2 cut(s)	69, 476
MaeIII	GTNAC	2 cut(s)	392, 674
MalI	GATC	4 cut(s)	461, 486, 606, 666
MboI	GATC	4 cut(s)	459, 484, 604, 664
MboII	GAAGA	5 cut(s)	102, 144, 230, 322, 674
MfeI	CAATTG	1 cut(s)	743
MflI	RGATCY	3 cut(s)	459, 604, 664
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	2 cut(s)	405, 743
MlyI	GAGTC	2 cut(s)	23, 748
MnlI	CCTC	7 cut(s)	59, 125, 160, 187, 297, 449, 513
MroI	TCCGGA	1 cut(s)	667
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	3 cut(s)	305, 385, 686
MspA1I	CMGCKG	2 cut(s)	292, 647
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	2 cut(s)	453, 561
MunI	CAATTG	1 cut(s)	743
Mva1269I	GAATGC	1 cut(s)	504
MvaI	CCWGG	2 cut(s)	453, 561
NdeII	GATC	4 cut(s)	459, 484, 604, 664
NlaIII	CATG	4 cut(s)	166, 202, 262, 304
NlaIV	GGNNCC	3 cut(s)	85, 98, 612
NmuCI	GTSAC	1 cut(s)	674
NspI	RCATGY	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	3 cut(s)	341, 377, 564
Pfl23II	CGTACG	1 cut(s)	477
PflFI	GACNNNGTC	2 cut(s)	200, 353
PkrI	GCNGC	4 cut(s)	23, 173, 176, 415
PleI	GAGTC	2 cut(s)	22, 747
PpsI	GAGTC	2 cut(s)	22, 747
Psp6I	CCWGG	2 cut(s)	451, 559
PspGI	CCWGG	2 cut(s)	451, 559
PspLI	CGTACG	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	85, 98, 612
PsuI	RGATCY	3 cut(s)	459, 604, 664
PsyI	GACNNNGTC	2 cut(s)	200, 353
PvuII	CAGCTG	2 cut(s)	292, 647
RsaI	GTAC	4 cut(s)	98, 479, 524, 545
RsaNI	GTAC	4 cut(s)	97, 478, 523, 544
RseI	CAYNNNNRTG	3 cut(s)	305, 385, 686
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	4 cut(s)	22, 172, 175, 414
Sau3AI	GATC	4 cut(s)	459, 484, 604, 664
SchI	GAGTC	2 cut(s)	23, 748
ScrFI	CCNGG	2 cut(s)	453, 561
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	388, 694
SmiMI	CAYNNNNRTG	3 cut(s)	305, 385, 686
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
Sse9I	AATT	2 cut(s)	405, 743
SsiI	CCGC	5 cut(s)	64, 118, 130, 174, 707
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	2 cut(s)	451, 559
TaaI	ACNGT	3 cut(s)	353, 482, 751
TaiI	ACGT	2 cut(s)	72, 479
TaqI	TCGA	4 cut(s)	17, 90, 255, 596
TasI	AATT	2 cut(s)	405, 743
TatI	WGTACW	2 cut(s)	522, 543
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	3 cut(s)	341, 377, 564
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	3 cut(s)	252, 387, 525
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	3 cut(s)	21, 171, 413
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	5 cut(s)	127, 231, 231, 242, 670
TspRI	CASTG	3 cut(s)	252, 387, 525
Tth111I	GACNNNGTC	2 cut(s)	200, 353
XceI	RCATGY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.