Rh1AG030800

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002378
Physical Location & Seq
Forward (+)
5582900 .. 5584514
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG030800.1

Sequence Viewer

Length: 567 bp
ATGATGAGGGACGTGTCGAGCTGCAACACGTACGATTACGGAGACGCCCAATACTGGGACGCCCGCTACGTCCAAGAAGGTGACTCCTTATTCGACTGGTGCCAGCGCTACTCTGCTCTCCGCCCTTTCATCCGCAACTTCATTCCCCTCACCTCCTCTCCTGTTCTCGTCGTCGGCTCCGGCAATGCCGTTATGTCGGAGGACATGGCGAAAGATGGATATGAAGACATAATGAACATTGACATCTCATCAGTGGCTATCAACCTCATGAAGACCAGAAACAAGCACATTCCTCAGTTGAAAGGTAACCAAACTCCTCGTTGGAATCTCTACCCACTACAGTTCTATGTTGTATTGTCAATGGATGCTTTGGAACCGTATATGAGTCAGAGGACATTGGAGGTTCATTGGGGAGGCCATCATCGTAACTTCTTGGAAGGTTTGAACAAACAGCTAGAGAAGAGTGACATACTGTATGGCTACACTTTTGATGAACTTGTCAAAGCAACATATTATAATGGGAATCCCTTAACTGAATTTAACAACACTGCCCGGGTATCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

188

Amino Acids

21.75

Weight (kDa)

5.32

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Fe_N PF00081 120 - 156 4.4e-08 Iron/manganese superoxide dismutases, alpha-hairpin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 99
AciI CCGC 3 cut(s) 64, 121, 133
AcsI RAATTY 1 cut(s) 536
AcyI GRCGYC 2 cut(s) 45, 60
AfaI GTAC 1 cut(s) 32
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 54, 55
AflIII ACRYGT 2 cut(s) 12, 27
AgsI TTSAA 2 cut(s) 301, 445
AjiI CACGTC 1 cut(s) 13
AluBI AGCT 2 cut(s) 21, 454
AluI AGCT 2 cut(s) 21, 454
Alw26I GTCTC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 552
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 536
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AspLEI GCGC 1 cut(s) 108
AsuC2I CCSGG 2 cut(s) 553, 554
AsuHPI GGTGA 2 cut(s) 92, 142
AvaI CYCGRG 1 cut(s) 552
BanI GGYRCC 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 231, 278
BbvI GCAGC 1 cut(s) 8
BccI CCATC 2 cut(s) 209, 426
BceAI ACGGC 1 cut(s) 173
BcnI CCSGG 2 cut(s) 553, 554
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 338
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 2 cut(s) 553, 554
BmeT110I CYCGRG 1 cut(s) 552
BmgBI CACGTC 1 cut(s) 13
BmiI GGNNCC 3 cut(s) 101, 178, 375
BmrFI CCNGG 2 cut(s) 553, 554
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 231, 278
BpuMI CCSGG 2 cut(s) 553, 554
BsaAI YACGTR 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 45, 60
BsaJI CCNNGG 1 cut(s) 552
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 55
Bse1I ACTGG 2 cut(s) 59, 101
Bse3DI GCAATG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 2 cut(s) 129, 370
BseLI CCNNNNNNNGG 2 cut(s) 54, 55
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 2 cut(s) 59, 101
BseRI GAGGAG 2 cut(s) 145, 306
BseXI GCAGC 1 cut(s) 8
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 2 cut(s) 180, 553
BsiWI CGTACG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 23, 71
BslI CCNNNNNNNGG 2 cut(s) 54, 55
BsmAI GTCTC 1 cut(s) 36
BsmBI CGTCTC 1 cut(s) 36
BsmFI GGGAC 2 cut(s) 23, 71
BsnI GGCC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 552
BspACI CCGC 3 cut(s) 64, 121, 133
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 101, 178, 375
BspT107I GGYRCC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 2 cut(s) 59, 101
BssECI CCNNGG 1 cut(s) 552
BssNI GRCGYC 2 cut(s) 45, 60
Bst4CI ACNGT 3 cut(s) 342, 378, 474
Bst6I CTCTTC 1 cut(s) 455
BstACI GRCGYC 2 cut(s) 45, 60
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 64, 104
BstDEI CTNAG 2 cut(s) 294, 564
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 2 cut(s) 129, 370
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 551, 552
BstSFI CTRYAG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 8
BstV2I GAAGAC 2 cut(s) 231, 278
BsuRI GGCC 1 cut(s) 417
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 129, 370
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 258, 546
Cac8I GCNNGC 2 cut(s) 64, 104
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 108
Cfr9I CCCGGG 1 cut(s) 552
CseI GACGC 2 cut(s) 53, 68
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 205, 268
CviJI RGCY 6 cut(s) 21, 177, 257, 417, 454, 480
CviKI_1 RGCY 6 cut(s) 21, 177, 257, 417, 454, 480
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 294, 564
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
EciI GGCGGA 1 cut(s) 110
Eco47III AGCGCT 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 552
Eco91I GGTNACC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 305
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 2 cut(s) 208, 271
FaqI GGGAC 2 cut(s) 23, 71
FatI CATG 2 cut(s) 204, 267
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 2 cut(s) 116, 377
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 1 cut(s) 455
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 22
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 417
HapII CCGG 2 cut(s) 180, 553
HgaI GACGC 2 cut(s) 53, 68
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 2 cut(s) 45, 60
Hin1II CATG 2 cut(s) 208, 271
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 4 cut(s) 83, 325, 385, 523
HpaII CCGG 2 cut(s) 180, 553
HphI GGTGA 2 cut(s) 92, 142
Hpy188I TCNGA 2 cut(s) 199, 390
Hpy188III TCNNGA 1 cut(s) 268
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 2 cut(s) 71, 431
HpyCH4III ACNGT 3 cut(s) 342, 378, 474
HpyCH4IV ACGT 3 cut(s) 12, 29, 69
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 2 cut(s) 294, 564
HpySE526I ACGT 3 cut(s) 12, 29, 69
Hsp92I GRCGYC 2 cut(s) 45, 60
Hsp92II CATG 2 cut(s) 208, 271
HspAI GCGC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 6 cut(s) 40, 82, 116, 174, 193, 289
Lsp1109I GCAGC 1 cut(s) 8
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 455
MaeII ACGT 3 cut(s) 12, 29, 69
MaeIII GTNAC 4 cut(s) 80, 305, 425, 464
MboII GAAGA 3 cut(s) 236, 283, 472
MluCI AATT 1 cut(s) 536
MlyI GAGTC 2 cut(s) 77, 394
MmeI TCCRAC 2 cut(s) 177, 302
MseI TTAA 2 cut(s) 530, 540
MspI CCGG 2 cut(s) 180, 553
MspR9I CCNGG 2 cut(s) 553, 554
NciI CCSGG 2 cut(s) 553, 554
NlaIII CATG 2 cut(s) 208, 271
NlaIV GGNNCC 3 cut(s) 101, 178, 375
NmuCI GTSAC 2 cut(s) 80, 464
PagI TCATGA 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 2 cut(s) 325, 523
Pfl23II CGTACG 1 cut(s) 30
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 2 cut(s) 77, 393
PpsI GAGTC 2 cut(s) 77, 393
Ppu21I YACGTR 1 cut(s) 30
PsiI TTATAA 1 cut(s) 516
PspEI GGTNACC 1 cut(s) 305
PspLI CGTACG 1 cut(s) 30
PspN4I GGNNCC 3 cut(s) 101, 178, 375
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 530, 540
SatI GCNGC 1 cut(s) 22
SchI GAGTC 2 cut(s) 77, 394
ScrFI CCNGG 2 cut(s) 553, 554
SfaNI GCATC 1 cut(s) 355
SfcI CTRYAG 1 cut(s) 338
SmaI CCCGGG 1 cut(s) 554
Sse9I AATT 1 cut(s) 536
SsiI CCGC 3 cut(s) 64, 121, 133
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 2 cut(s) 551, 552
TaaI ACNGT 3 cut(s) 342, 378, 474
TaiI ACGT 3 cut(s) 15, 32, 72
TaqI TCGA 2 cut(s) 17, 93
TasI AATT 1 cut(s) 536
TfiI GAWTC 2 cut(s) 325, 523
Tru1I TTAA 2 cut(s) 530, 540
Tru9I TTAA 2 cut(s) 530, 540
TscAI CASTG 2 cut(s) 258, 553
TseFI GTSAC 2 cut(s) 80, 464
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 2 cut(s) 80, 464
TspDTI ATGAA 7 cut(s) 118, 130, 237, 248, 284, 395, 507
TspGWI ACGGA 1 cut(s) 54
TspMI CCCGGG 1 cut(s) 552
TspRI CASTG 2 cut(s) 258, 553
XapI RAATTY 1 cut(s) 536
XmaI CCCGGG 1 cut(s) 552
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.