Rh1DG040700

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002378
Physical Location & Seq
Reverse (-)
6450899 .. 6451349
451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG040700.1

Sequence Viewer

Length: 324 bp
ATGATGAGGGACGTGTCGAGCTGCAACACGTACGATTACGGAGACGCCCAATATTGGGACGCCCGCTATGTCCAAGAAGGTGACTCCTTATTCGACTGGTACCAGCGCTACTCTGCTCTCCGCCCTTCCATCCGCAACTTCATTCCCCTCACCTCCTCTCCTGTTCTCGTACTCGGCTCCGGCAATGCCGTTATGTCCGAGGACATGGCGAAAGATGGATATGAAGACATAATGAACATTGACATCTCATCAGTGGCTATCAACCTCATGAAGACCAGAAACAAGCACATCCCTCAGTTGAAATGTAACCAAACTCCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

107

Amino Acids

12.28

Weight (kDa)

5.19

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 99
AciI CCGC 3 cut(s) 64, 121, 133
AcyI GRCGYC 2 cut(s) 45, 60
AfaI GTAC 3 cut(s) 32, 101, 171
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 54, 55
AflIII ACRYGT 2 cut(s) 12, 27
AgsI TTSAA 1 cut(s) 301
AjiI CACGTC 1 cut(s) 13
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 36
Aor51HI AGCGCT 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 92, 142
BanI GGYRCC 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 231, 278
BbvI GCAGC 1 cut(s) 8
BccI CCATC 2 cut(s) 137, 209
BceAI ACGGC 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 101, 178
BpiI GAAGAC 2 cut(s) 231, 278
BsaAI YACGTR 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 45, 60
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 55
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 129, 288
BseLI CCNNNNNNNGG 2 cut(s) 54, 55
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 2 cut(s) 145, 306
BseXI GCAGC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 180
BsiWI CGTACG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 23, 71
BslI CCNNNNNNNGG 2 cut(s) 54, 55
BsmAI GTCTC 1 cut(s) 36
BsmBI CGTCTC 1 cut(s) 36
BsmFI GGGAC 2 cut(s) 23, 71
BspACI CCGC 3 cut(s) 64, 121, 133
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 101, 178
BspT107I GGYRCC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 198
BssNI GRCGYC 2 cut(s) 45, 60
BstACI GRCGYC 2 cut(s) 45, 60
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 129, 288
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 8
BstV2I GAAGAC 2 cut(s) 231, 278
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 129, 288
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 64
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 108
CseI GACGC 2 cut(s) 53, 68
Csp6I GTAC 3 cut(s) 31, 100, 170
CviAII CATG 2 cut(s) 205, 268
CviJI RGCY 3 cut(s) 21, 177, 257
CviKI_1 RGCY 3 cut(s) 21, 177, 257
CviQI GTAC 3 cut(s) 31, 100, 170
DdeI CTNAG 1 cut(s) 294
EciI GGCGGA 1 cut(s) 110
Eco47III AGCGCT 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 2 cut(s) 208, 271
FaiI YATR 6 cut(s) 69, 194, 206, 222, 230, 269
FaqI GGGAC 2 cut(s) 23, 71
FatI CATG 2 cut(s) 204, 267
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 2 cut(s) 116, 275
Fsp4HI GCNGC 1 cut(s) 22
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 22
HaeII RGCGCY 1 cut(s) 109
HapII CCGG 1 cut(s) 180
HgaI GACGC 2 cut(s) 53, 68
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 2 cut(s) 45, 60
Hin1II CATG 2 cut(s) 208, 271
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 92, 142
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 71, 135
HpyCH4IV ACGT 2 cut(s) 12, 29
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 2 cut(s) 12, 29
Hsp92I GRCGYC 2 cut(s) 45, 60
Hsp92II CATG 2 cut(s) 208, 271
HspAI GCGC 1 cut(s) 106
KpnI GGTACC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 5 cut(s) 82, 116, 174, 193, 289
Lsp1109I GCAGC 1 cut(s) 8
MaeII ACGT 2 cut(s) 12, 29
MaeIII GTNAC 2 cut(s) 80, 305
MboII GAAGA 2 cut(s) 236, 283
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 6 cut(s) 158, 163, 166, 193, 275, 303
MspI CCGG 1 cut(s) 180
NlaIII CATG 2 cut(s) 208, 271
NlaIV GGNNCC 2 cut(s) 101, 178
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 80
PagI TCATGA 1 cut(s) 267
Pfl23II CGTACG 1 cut(s) 30
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 30
PspLI CGTACG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 101, 178
RsaI GTAC 3 cut(s) 32, 101, 171
RsaNI GTAC 3 cut(s) 31, 100, 170
SatI GCNGC 1 cut(s) 22
SchI GAGTC 1 cut(s) 77
SetI ASST 6 cut(s) 15, 23, 32, 82, 155, 267
SsiI CCGC 3 cut(s) 64, 121, 133
SspI AATATT 1 cut(s) 53
TaiI ACGT 2 cut(s) 15, 32
TaqI TCGA 2 cut(s) 17, 93
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 130, 237, 248, 284
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.