Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002378

Physical Location & Seq

Genomic Coordinates Forward (+)

2245360 .. 2248577

Gene Structure 3218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G023000.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTCAAGGACGTGTCGAGCTGCAACACCTACAACTATGGCGACGCCCTCTATTGGGACGCCCGCTATGTCGAAGAAGGAGGCTCCTTCGACTGGTACCAGCGCTACTCTTCTCTCCGCCCTTTTGTCCGAAACTACATACCAACCTCCTCTCGGGTTCTCATGGTCGGCTGTGGCAATGCTGTTATGTCTGAGGACATGGTTGCGGATGGATATGAAGACATAATGAACGTTGACATTTCATCAGTGGCCATTGACATGATGAAAAGAAAATATGAGCACATACCTCAGCTGAAATACATGCAAATGGATGTTAGGGATATGAGTGTCTTCCCAGATGAATCATTTGAAGGTGTCATTGATAAAGGAACTCTTGATTCACTGATGTGTGGCAATGATGCTCCAATTAGTGCTGCTCAAATGCTAGGGGAAGTGAGTAGGCTTCTTAAACCTGGAGGGATCTATTTGTTGATAACCTATGGTGATCCTACAGTAAGGATGCCTCATTTGATCCGGCCAGTGTACAATTGGAAAGTTAATTTGTACATTATACCCAGACCAGGATTCCAAAGGCCTGAAGGTTGTAGTTCATCAATAAAGTCGTATTTGGAACCTATTCCTATCACCGAGAAGGGCTTACTTCCAGCTGAGTTTGTTTTGGAAGATCCAGATTGTCACTTTATATATGTGTGTAAAAAGGATGATATGGAGCTAAGTAGTGCAACAACTTATGGATTGACAGTTGATCTCTTACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

253

Amino Acids

28.63

Weight (kDa)

4.69

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60910 AT3G60910
fragaria_vesca	FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670
malus_domestica	MD02G1301500.v1.1 MD07G1022400.v1.1
prunus_persica	Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1
pyrus_communis	pycom02g25330 pycom02g25360
rosa_chinensis	RchiOBHm_Chr1g0318081 RchiOBHm_Chr1g0318181
rosa_laevigata	RLG00000030554
rosa_multiflora	Rmu_sc0005106.1_g000005
rosa_roxburghii	Rroxscaffold_4G00329520 Rroxscaffold_4G00329750 Rroxscaffold_4G00329790
rosa_rugosa	Rorug01G0019700 Rorug01G0019700 Rorug01G0019700
rosa_samantha	Rh1AG030800 Rh1AG031400 Rh1BG027000 Rh1CG029600 Rh1CG030100 Rh1DG039800 Rh1DG040700
rosa_wichuraiana	Rw1G002430 Rw1G002470 Rw1G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	96
AciI	CCGC	3 cut(s)	64, 118, 206
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	4 cut(s)	467, 479, 505, 659
AcoI	YGGCCR	2 cut(s)	249, 515
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	2 cut(s)	45, 60
AfaI	GTAC	3 cut(s)	98, 524, 545
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	5 cut(s)	54, 55, 93, 153, 560
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	7, 350
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	2 cut(s)	451, 559
AleI	CACNNNNGTG	1 cut(s)	385
AluBI	AGCT	4 cut(s)	21, 292, 647, 712
AluI	AGCT	4 cut(s)	21, 292, 647, 712
Alw21I	GWGCWC	1 cut(s)	282
AlwI	GGATC	4 cut(s)	467, 479, 505, 659
Ama87I	CYCGRG	1 cut(s)	153
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	3 cut(s)	249, 515, 572
ApeKI	GCWGC	2 cut(s)	21, 413
Asp700I	GAANNNNTTC	1 cut(s)	615
Asp718I	GGTACC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	494, 616
AvaI	CYCGRG	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	96
BbsI	GAAGAC	2 cut(s)	225, 322
Bbv12I	GWGCWC	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	8, 400
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	2 cut(s)	453, 561
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	2 cut(s)	22, 414
BlsI	GCNGC	2 cut(s)	23, 415
Bme1390I	CCNGG	2 cut(s)	453, 561
BmeT110I	CYCGRG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	13
BmiI	GGNNCC	3 cut(s)	85, 98, 612
BmrFI	CCNGG	2 cut(s)	453, 561
BmsI	GCATC	2 cut(s)	388, 489
BpiI	GAAGAC	2 cut(s)	225, 322
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	288
BsaHI	GRCGYC	2 cut(s)	45, 60
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 55, 93, 153, 560
Bse1I	ACTGG	2 cut(s)	98, 518
Bse3DI	GCAATG	2 cut(s)	184, 400
BseBI	CCWGG	2 cut(s)	453, 561
BseGI	GGATG	4 cut(s)	214, 316, 504, 706
BseLI	CCNNNNNNNGG	5 cut(s)	54, 55, 93, 153, 560
BseMI	GCAATG	2 cut(s)	184, 400
BseMII	CTCAG	3 cut(s)	183, 302, 639
BseNI	ACTGG	2 cut(s)	98, 518
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	8, 400
BshFI	GGCC	3 cut(s)	251, 517, 574
BshNI	GGYRCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	5 cut(s)	54, 55, 93, 153, 560
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	251, 517, 574
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp1407I	TGTACA	2 cut(s)	522, 543
Bsp143I	GATC	5 cut(s)	459, 484, 510, 664, 745
BspACI	CCGC	3 cut(s)	64, 118, 206
BspANI	GGCC	3 cut(s)	251, 517, 574
BspCNI	CTCAG	3 cut(s)	184, 301, 640
BspLI	GGNNCC	3 cut(s)	85, 98, 612
BspPI	GGATC	4 cut(s)	467, 479, 505, 659
BspT107I	GGYRCC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	184, 400
BsrGI	TGTACA	2 cut(s)	522, 543
BsrI	ACTGG	2 cut(s)	98, 518
BssMI	GATC	5 cut(s)	459, 484, 510, 664, 745
BssNI	GRCGYC	2 cut(s)	45, 60
Bst2UI	CCWGG	2 cut(s)	453, 561
Bst4CI	ACNGT	3 cut(s)	493, 742, 756
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	2 cut(s)	45, 60
BstAUI	TGTACA	2 cut(s)	522, 543
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	4 cut(s)	192, 288, 648, 713
BstF5I	GGATG	4 cut(s)	214, 316, 504, 706
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	5 cut(s)	462, 487, 513, 667, 748
BstMBI	GATC	5 cut(s)	459, 484, 510, 664, 745
BstNI	CCWGG	2 cut(s)	453, 561
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	451, 559
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	8, 400
BstV2I	GAAGAC	2 cut(s)	225, 322
BstX2I	RGATCY	2 cut(s)	459, 664
BstYI	RGATCY	2 cut(s)	459, 664
BsuRI	GGCC	3 cut(s)	251, 517, 574
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	4 cut(s)	214, 316, 504, 706
BtsIMutI	CAGTG	3 cut(s)	252, 380, 525
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	105
CseI	GACGC	2 cut(s)	53, 68
Csp6I	GTAC	3 cut(s)	97, 523, 544
CviAII	CATG	4 cut(s)	163, 199, 259, 301
CviQI	GTAC	3 cut(s)	97, 523, 544
DdeI	CTNAG	4 cut(s)	192, 288, 648, 713
DpnI	GATC	5 cut(s)	461, 486, 512, 666, 747
DpnII	GATC	5 cut(s)	459, 484, 510, 664, 745
EaeI	YGGCCR	2 cut(s)	249, 515
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	107
Eco147I	AGGCCT	1 cut(s)	574
Eco47III	AGCGCT	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	451, 559
FaeI	CATG	4 cut(s)	166, 202, 262, 304
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	162, 198, 258, 300
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	22, 414
FokI	GGATG	4 cut(s)	221, 323, 511, 713
Fsp4HI	GCNGC	2 cut(s)	22, 414
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	22, 414
GsuI	CTGGAG	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	3 cut(s)	251, 517, 574
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	2 cut(s)	53, 68
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	45, 60
Hin1II	CATG	4 cut(s)	166, 202, 262, 304
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	341, 377, 564
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	2 cut(s)	494, 616
Hpy166II	GTNNAC	2 cut(s)	235, 523
Hpy188I	TCNGA	2 cut(s)	131, 193
Hpy188III	TCNNGA	2 cut(s)	374, 668
Hpy8I	GTNNAC	2 cut(s)	235, 523
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	5 cut(s)	71, 97, 344, 572, 625
HpyCH4III	ACNGT	3 cut(s)	493, 742, 756
HpyCH4IV	ACGT	2 cut(s)	12, 231
HpyCH4V	TGCA	3 cut(s)	24, 304, 722
HpyF3I	CTNAG	4 cut(s)	192, 288, 648, 713
HpySE526I	ACGT	2 cut(s)	12, 231
Hsp92I	GRCGYC	2 cut(s)	45, 60
Hsp92II	CATG	4 cut(s)	166, 202, 262, 304
HspAI	GCGC	1 cut(s)	103
KpnI	GGTACC	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	459, 484, 510, 664, 745
LmnI	GCTCC	3 cut(s)	89, 406, 709
Lsp1109I	GCAGC	2 cut(s)	8, 400
LweI	GCATC	2 cut(s)	388, 489
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	2 cut(s)	12, 231
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	5 cut(s)	461, 486, 512, 666, 747
MboI	GATC	5 cut(s)	459, 484, 510, 664, 745
MboII	GAAGA	5 cut(s)	86, 102, 230, 322, 674
MfeI	CAATTG	1 cut(s)	526
MflI	RGATCY	2 cut(s)	459, 664
MhlI	GDGCHC	1 cut(s)	282
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	3 cut(s)	405, 526, 538
MluNI	TGGCCA	1 cut(s)	251
MnlI	CCTC	8 cut(s)	59, 74, 157, 160, 187, 297, 449, 513
Mox20I	TGGCCA	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	615
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	2 cut(s)	447, 537
MslI	CAYNNNNRTG	3 cut(s)	257, 305, 385
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	292, 647
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	453, 561
MunI	CAATTG	1 cut(s)	526
MvaI	CCWGG	2 cut(s)	453, 561
NdeII	GATC	5 cut(s)	459, 484, 510, 664, 745
NlaIII	CATG	4 cut(s)	166, 202, 262, 304
NlaIV	GGNNCC	3 cut(s)	85, 98, 612
NmuCI	GTSAC	1 cut(s)	674
NspI	RCATGY	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	574
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	3 cut(s)	341, 377, 564
PkrI	GCNGC	2 cut(s)	23, 415
Psp1406I	AACGTT	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	451, 559
PspGI	CCWGG	2 cut(s)	451, 559
PspN4I	GGNNCC	3 cut(s)	85, 98, 612
PsuI	RGATCY	2 cut(s)	459, 664
PvuII	CAGCTG	2 cut(s)	292, 647
RsaI	GTAC	3 cut(s)	98, 524, 545
RsaNI	GTAC	3 cut(s)	97, 523, 544
RseI	CAYNNNNRTG	3 cut(s)	257, 305, 385
SaqAI	TTAA	2 cut(s)	447, 537
SatI	GCNGC	2 cut(s)	22, 414
Sau3AI	GATC	5 cut(s)	459, 484, 510, 664, 745
ScrFI	CCNGG	2 cut(s)	453, 561
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	388, 489
SfcI	CTRYAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	3 cut(s)	257, 305, 385
Sse9I	AATT	3 cut(s)	405, 526, 538
SseBI	AGGCCT	1 cut(s)	574
SsiI	CCGC	3 cut(s)	64, 118, 206
SspMI	CTAG	1 cut(s)	425
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	2 cut(s)	451, 559
TaaI	ACNGT	3 cut(s)	493, 742, 756
TaiI	ACGT	2 cut(s)	15, 234
TaqI	TCGA	3 cut(s)	17, 72, 90
TasI	AATT	3 cut(s)	405, 526, 538
TatI	WGTACW	2 cut(s)	522, 543
TfiI	GAWTC	3 cut(s)	341, 377, 564
Tru1I	TTAA	2 cut(s)	447, 537
Tru9I	TTAA	2 cut(s)	447, 537
TscAI	CASTG	3 cut(s)	252, 387, 525
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	2 cut(s)	21, 413
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	6 cut(s)	231, 231, 242, 278, 354, 579
TspRI	CASTG	3 cut(s)	252, 387, 525
XceI	RCATGY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.