Rh1CG030100

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002378
Physical Location & Seq
Forward (+)
6007731 .. 6011905
4175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG030100.1

Sequence Viewer

Length: 588 bp
ATGATGAGGGACGTGTCGAGCTGCAACACGTACGATTACGGAGACGCCCAATACTGGGACGCCCGCTACGTCCAGGAAGGTGACTCCTTATTCGACTGGTACCAGCGCTACTCTGCTCTCCGCCCTTTCATCCGCAACTTCATTCCCCTCACCTCCTCTCCTGTTCTCGTCGTCGGCTCCGGCAATGCCGTTATGTCCGAGGACATGGCGAAAGATGGATATGAAGACATAATGAACATTGACATCTCATCAGTGGCTATCAACCTCATGAAAACCAGAAACAGGCAGATCCCTCAGTTGAAATACAAGCAAATGGATGTGAGGGATATGAGCTTCTTCCCAGATGAATCCTTTGACGGTATTATTGATAAAGGAACTCTTGATTCATTGATGTGTGGCAGTGATGCTCCGATTAGTGCTGCCCGAATGCTAGGGGAAGTGAGTAGGCTTCTTAAACCTGGAGGGGTCTATATTTTGATAACTTATGGTGATCCTAAAGTTAGAATGCCTCATTTGAGCCGGCCAGTGTACGACTGGAATACTGTTCTGTATATCCAACTATCAAAAACAGAATTCAAGTGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

195

Amino Acids

22.35

Weight (kDa)

5.03

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_31 PF13847 54 - 180 2.8e-11 Methyltransferase domain
Methyltransf_25 PF13649 55 - 155 1.6e-11 Methyltransferase domain
Methyltransf_11 PF08241 56 - 158 1.2e-13 Methyltransferase domain
Methyltransf_12 PF08242 56 - 156 4.8e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 99
AciI CCGC 3 cut(s) 64, 121, 133
AclWI GGATC 2 cut(s) 283, 485
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 1 cut(s) 572
AcyI GRCGYC 2 cut(s) 45, 60
AfaI GTAC 3 cut(s) 32, 101, 530
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 3 cut(s) 54, 55, 282
AflIII ACRYGT 2 cut(s) 12, 27
AgsI TTSAA 2 cut(s) 301, 577
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 72, 457
AluBI AGCT 2 cut(s) 21, 333
AluI AGCT 2 cut(s) 21, 333
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 2 cut(s) 283, 485
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 21, 419
ApoI RAATTY 1 cut(s) 572
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 92, 142, 500
BanI GGYRCC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 8, 406
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 74, 459
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 431
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 2 cut(s) 22, 420
BlsI GCNGC 2 cut(s) 23, 421
Bme1390I CCNGG 2 cut(s) 74, 459
BmgBI CACGTC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 101, 178
BmrFI CCNGG 2 cut(s) 74, 459
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 480
BsaAI YACGTR 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 45, 60
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 55, 282
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 4 cut(s) 59, 101, 524, 539
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 2 cut(s) 74, 459
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 129, 322
BseLI CCNNNNNNNGG 3 cut(s) 54, 55, 282
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 4 cut(s) 59, 101, 524, 539
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 8, 406
BshFI GGCC 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 180, 520
BsiWI CGTACG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 23, 71
BslI CCNNNNNNNGG 3 cut(s) 54, 55, 282
BsmAI GTCTC 1 cut(s) 36
BsmBI CGTCTC 1 cut(s) 36
BsmFI GGGAC 2 cut(s) 23, 71
BsmI GAATGC 2 cut(s) 432, 510
BsnI GGCC 1 cut(s) 523
Bsp143I GATC 2 cut(s) 288, 490
BspACI CCGC 3 cut(s) 64, 121, 133
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 101, 178
BspPI GGATC 2 cut(s) 283, 485
BspT107I GGYRCC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 4 cut(s) 59, 101, 524, 539
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 288, 490
BssNI GRCGYC 2 cut(s) 45, 60
Bst2UI CCWGG 2 cut(s) 74, 459
Bst4CI ACNGT 2 cut(s) 359, 544
BstACI GRCGYC 2 cut(s) 45, 60
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 64, 521
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 129, 322
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 291, 493
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 2 cut(s) 288, 490
BstNI CCWGG 2 cut(s) 74, 459
BstSCI CCNGG 2 cut(s) 72, 457
BstV1I GCAGC 2 cut(s) 8, 406
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 1 cut(s) 523
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 129, 322
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 3 cut(s) 258, 406, 531
Cac8I GCNNGC 2 cut(s) 64, 521
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 519
CseI GACGC 2 cut(s) 53, 68
Csp6I GTAC 3 cut(s) 31, 100, 529
CviAII CATG 2 cut(s) 205, 268
CviJI RGCY 7 cut(s) 21, 177, 257, 333, 448, 519, 523
CviKI_1 RGCY 7 cut(s) 21, 177, 257, 333, 448, 519, 523
CviQI GTAC 3 cut(s) 31, 100, 529
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 290, 492
DpnII GATC 2 cut(s) 288, 490
EaeI YGGCCR 1 cut(s) 521
EciI GGCGGA 1 cut(s) 110
Eco47III AGCGCT 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 572
EcoRII CCWGG 2 cut(s) 72, 457
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 2 cut(s) 208, 271
FaiI YATR 9 cut(s) 194, 206, 222, 230, 269, 329, 471, 486, 552
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 2 cut(s) 23, 71
FatI CATG 2 cut(s) 204, 267
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 22, 420
FokI GGATG 2 cut(s) 116, 329
Fsp4HI GCNGC 2 cut(s) 22, 420
FspBI CTAG 1 cut(s) 431
GlaI GCGC 1 cut(s) 107
GluI GCNGC 2 cut(s) 22, 420
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 523
HapII CCGG 2 cut(s) 180, 520
HgaI GACGC 2 cut(s) 53, 68
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 2 cut(s) 45, 60
Hin1II CATG 2 cut(s) 208, 271
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 3 cut(s) 83, 347, 383
HpaII CCGG 2 cut(s) 180, 520
HphI GGTGA 3 cut(s) 92, 142, 500
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 2 cut(s) 199, 411
Hpy188III TCNNGA 2 cut(s) 268, 380
Hpy8I GTNNAC 1 cut(s) 529
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 359, 544
HpyCH4IV ACGT 3 cut(s) 12, 29, 69
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 3 cut(s) 12, 29, 69
Hsp92I GRCGYC 2 cut(s) 45, 60
Hsp92II CATG 2 cut(s) 208, 271
HspAI GCGC 1 cut(s) 106
KpnI GGTACC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 519
KroNI GCCGGC 1 cut(s) 521
Kzo9I GATC 2 cut(s) 288, 490
LmnI GCTCC 2 cut(s) 182, 412
Lsp1109I GCAGC 2 cut(s) 8, 406
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 431
MaeII ACGT 3 cut(s) 12, 29, 69
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 290, 492
MboI GATC 2 cut(s) 288, 490
MboII GAAGA 2 cut(s) 236, 328
MflI RGATCY 1 cut(s) 288
MluCI AATT 1 cut(s) 572
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 580
MnlI CCTC 9 cut(s) 158, 163, 166, 193, 275, 303, 315, 455, 519
MroNI GCCGGC 1 cut(s) 519
MseI TTAA 2 cut(s) 453, 586
MslI CAYNNNNRTG 1 cut(s) 391
MspI CCGG 2 cut(s) 180, 520
MspR9I CCNGG 2 cut(s) 74, 459
Mva1269I GAATGC 2 cut(s) 432, 510
MvaI CCWGG 2 cut(s) 74, 459
NaeI GCCGGC 1 cut(s) 521
NdeII GATC 2 cut(s) 288, 490
NgoMIV GCCGGC 1 cut(s) 519
NlaIII CATG 2 cut(s) 208, 271
NlaIV GGNNCC 2 cut(s) 101, 178
NmuCI GTSAC 1 cut(s) 80
PagI TCATGA 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 2 cut(s) 432, 510
PdiI GCCGGC 1 cut(s) 521
PfeI GAWTC 2 cut(s) 347, 383
Pfl23II CGTACG 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 2 cut(s) 23, 421
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 72, 457
PspGI CCWGG 2 cut(s) 72, 457
PspLI CGTACG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 101, 178
PsuI RGATCY 1 cut(s) 288
RsaI GTAC 3 cut(s) 32, 101, 530
RsaNI GTAC 3 cut(s) 31, 100, 529
RseI CAYNNNNRTG 1 cut(s) 391
SaqAI TTAA 2 cut(s) 453, 586
SatI GCNGC 2 cut(s) 22, 420
Sau3AI GATC 2 cut(s) 288, 490
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 74, 459
SetI ASST 9 cut(s) 15, 23, 32, 72, 82, 155, 267, 335, 460
SfaNI GCATC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 391
Sse9I AATT 1 cut(s) 572
SsiI CCGC 3 cut(s) 64, 121, 133
SspMI CTAG 1 cut(s) 431
StyD4I CCNGG 2 cut(s) 72, 457
TaaI ACNGT 2 cut(s) 359, 544
TaiI ACGT 3 cut(s) 15, 32, 72
TaqI TCGA 2 cut(s) 17, 93
TasI AATT 1 cut(s) 572
TfiI GAWTC 2 cut(s) 347, 383
Tru1I TTAA 2 cut(s) 453, 586
Tru9I TTAA 2 cut(s) 453, 586
TscAI CASTG 3 cut(s) 258, 406, 531
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 2 cut(s) 21, 419
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 7 cut(s) 118, 130, 237, 248, 284, 360, 375
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 3 cut(s) 258, 406, 531
XapI RAATTY 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 531
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.