Rroxscaffold_4G00329790

Methyltransferase-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
63126682 .. 63127082
401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00329790.1

Sequence Viewer

Length: 273 bp
ATGCGGGACGCCCGCTACGTCCAAGAAGGTGACTCCTTATTCGACCGGTACCAGCGCTACTCTGCTCTCCGCCCTTCCATCCGCAACTTCATTCCCCTCACCTCCTCTCTTGTTCTCGTCGTCGGCTCCGGCAATGCCGTTATGTCCGAGGACATGGCGAAAGATGGATATGAAGACATAATGAACATTGACATCTCATCGGTGGCTATCAACCTCATGAAGACCAGAAACAAGCACATCCCTCAGTTGAAATGTAACCAAACTCCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

10.25

Weight (kDa)

8.89

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 48
AciI CCGC 4 cut(s) 4, 13, 70, 82
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 50
AfeI AGCGCT 1 cut(s) 56
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 1 cut(s) 250
Aor51HI AGCGCT 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AsiGI ACCGGT 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 41, 91
BanI GGYRCC 1 cut(s) 48
BbsI GAAGAC 2 cut(s) 180, 227
BccI CCATC 2 cut(s) 86, 158
BceAI ACGGC 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 50, 127
BpiI GAAGAC 2 cut(s) 180, 227
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 45
Bse118I RCCGGY 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 78, 237
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 257
BseRI GAGGAG 2 cut(s) 94, 255
Bsh1285I CGRYCG 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 48
BshTI ACCGGT 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 46, 129
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BspACI CCGC 4 cut(s) 4, 13, 70, 82
BspCNI CTCAG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 50, 127
BspT107I GGYRCC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 78, 237
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstMCI CGRYCG 1 cut(s) 46
BstV2I GAAGAC 2 cut(s) 180, 227
BtsCI GGATG 2 cut(s) 78, 237
Cac8I GCNNGC 1 cut(s) 13
CciI TCATGA 1 cut(s) 216
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 45
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 49
CspAI ACCGGT 1 cut(s) 45
CviAII CATG 2 cut(s) 154, 217
CviJI RGCY 2 cut(s) 126, 206
CviKI_1 RGCY 2 cut(s) 126, 206
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 243
EciI GGCGGA 1 cut(s) 59
Eco47III AGCGCT 1 cut(s) 56
FaeI CATG 2 cut(s) 157, 220
FaiI YATR 5 cut(s) 143, 155, 171, 179, 218
FaqI GGGAC 1 cut(s) 20
FatI CATG 2 cut(s) 153, 216
FauI CCCGC 1 cut(s) 20
FokI GGATG 2 cut(s) 65, 224
GlaI GCGC 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 58
HapII CCGG 2 cut(s) 46, 129
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 157, 220
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 32
HpaII CCGG 2 cut(s) 46, 129
HphI GGTGA 2 cut(s) 41, 91
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 217
Hpy99I CGWCG 2 cut(s) 122, 125
HpyAV CCTTC 2 cut(s) 20, 84
HpyCH4IV ACGT 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 157, 220
HspAI GCGC 1 cut(s) 55
KpnI GGTACC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 4 cut(s) 59, 65, 142, 238
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 29, 254
MboII GAAGA 2 cut(s) 185, 232
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 6 cut(s) 107, 112, 115, 142, 224, 252
MspI CCGG 2 cut(s) 46, 129
NlaIII CATG 2 cut(s) 157, 220
NlaIV GGNNCC 2 cut(s) 50, 127
NmuCI GTSAC 1 cut(s) 29
PagI TCATGA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PinAI ACCGGT 1 cut(s) 45
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 50, 127
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SchI GAGTC 1 cut(s) 26
SetI ASST 4 cut(s) 21, 31, 104, 216
SsiI CCGC 4 cut(s) 4, 13, 70, 82
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 42
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 79, 186, 197, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.