Rmu_sc0005106.1_g000005

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005106.1
OG0002378
Physical Location & Seq
Forward (+)
10806 .. 14246
3441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005106.1_g000005.1.cds

Sequence Viewer

Length: 651 bp
atgatgagggacgtgtcgagctgcaacacgtacgattacggagacgcccaatactgggacgcccgctacgtccaagaaggtgactccttattcgactggtaccagcgctactctgctctccgccctttcatccgcaacttcattcccctcacctcctctcctgttctcgtcgtcggctccggaaatgccgttatgtccgaggacatggcgaaagatggatatgaagacataatgaacattgacatctcatcagtggctatcaacctcatgaagaccagaaacaagcacatccctcatgatgctccaattagtgctgcccgaatgctaggggaagtgagtaggcttcttaaacctggaggggtctatattttgataacttatggtgatcctaaagttagaatgcctcatttgagccggcctgtgtacgactggaatactgttctgtatatccaacccagaccaggattccagaggcctgaaggctgcagttcctcaaggaagtcatatttggaacctgttcctatcaccgagaacggttcccttccagctgagtttgttatggaagatccagattcacacttcatttatgtgtgtaaaaaggatgccaaggaattactttcactatatagattgagaattgatgatttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

216

Amino Acids

24.67

Weight (kDa)

5.59

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 3 cut(s) 64, 121, 133
AclWI GGATC 2 cut(s) 380, 560
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 2 cut(s) 45, 60
AfaI GTAC 3 cut(s) 32, 101, 425
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 3 cut(s) 54, 55, 461
AflIII ACRYGT 2 cut(s) 12, 27
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 352, 460
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 2 cut(s) 21, 548
AluI AGCT 2 cut(s) 21, 548
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 2 cut(s) 380, 560
Aor13HI TCCGGA 1 cut(s) 179
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 2 cut(s) 416, 473
ApeKI GCWGC 3 cut(s) 21, 314, 483
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 1 cut(s) 516
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 4 cut(s) 92, 142, 395, 517
BanI GGYRCC 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 231, 278
BbvI GCAGC 3 cut(s) 8, 301, 470
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 354, 462
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 3 cut(s) 22, 315, 484
BlsI GCNGC 3 cut(s) 23, 316, 485
Bme1390I CCNGG 2 cut(s) 354, 462
BmgBI CACGTC 1 cut(s) 13
BmiI GGNNCC 4 cut(s) 101, 178, 513, 538
BmrFI CCNGG 2 cut(s) 354, 462
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 2 cut(s) 289, 592
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 231, 278
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 478
BsaAI YACGTR 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 45, 60
BsaJI CCNNGG 2 cut(s) 198, 606
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 55, 461
Bse118I RCCGGY 1 cut(s) 414
Bse1I ACTGG 3 cut(s) 59, 101, 434
BseAI TCCGGA 1 cut(s) 179
BseBI CCWGG 2 cut(s) 354, 462
BseDI CCNNGG 2 cut(s) 198, 606
BseGI GGATG 3 cut(s) 129, 288, 607
BseLI CCNNNNNNNGG 3 cut(s) 54, 55, 461
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 3 cut(s) 59, 101, 434
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 3 cut(s) 8, 301, 470
BshFI GGCC 2 cut(s) 418, 475
BshNI GGYRCC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 180, 415
BsiWI CGTACG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 23, 71
BslI CCNNNNNNNGG 3 cut(s) 54, 55, 461
BsmAI GTCTC 1 cut(s) 36
BsmBI CGTCTC 1 cut(s) 36
BsmFI GGGAC 2 cut(s) 23, 71
BsmI GAATGC 2 cut(s) 327, 405
BsnI GGCC 2 cut(s) 418, 475
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 2 cut(s) 385, 565
BspACI CCGC 3 cut(s) 64, 121, 133
BspANI GGCC 2 cut(s) 418, 475
BspCNI CTCAG 1 cut(s) 541
BspEI TCCGGA 1 cut(s) 179
BspHI TCATGA 2 cut(s) 267, 295
BspLI GGNNCC 4 cut(s) 101, 178, 513, 538
BspMAI CTGCAG 1 cut(s) 488
BspPI GGATC 2 cut(s) 380, 560
BspT107I GGYRCC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 414
BsrI ACTGG 3 cut(s) 59, 101, 434
BssAI RCCGGY 1 cut(s) 414
BssECI CCNNGG 2 cut(s) 198, 606
BssMI GATC 2 cut(s) 385, 565
BssNI GRCGYC 2 cut(s) 45, 60
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 354, 462
Bst4CI ACNGT 2 cut(s) 439, 536
BstACI GRCGYC 2 cut(s) 45, 60
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 64, 416
BstDEI CTNAG 1 cut(s) 549
BstF5I GGATG 3 cut(s) 129, 288, 607
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 388, 568
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 2 cut(s) 385, 565
BstNI CCWGG 2 cut(s) 354, 462
BstSCI CCNGG 2 cut(s) 352, 460
BstSFI CTRYAG 1 cut(s) 484
BstV1I GCAGC 3 cut(s) 8, 301, 470
BstV2I GAAGAC 2 cut(s) 231, 278
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 2 cut(s) 418, 475
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 3 cut(s) 129, 288, 607
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 64, 416
CciI TCATGA 2 cut(s) 267, 295
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 414
CseI GACGC 2 cut(s) 53, 68
Csp6I GTAC 3 cut(s) 31, 100, 424
CviAII CATG 3 cut(s) 205, 268, 296
CviJI RGCY 9 cut(s) 21, 177, 257, 343, 414, 418, 475, 483, 548
CviKI_1 RGCY 9 cut(s) 21, 177, 257, 343, 414, 418, 475, 483, 548
CviQI GTAC 3 cut(s) 31, 100, 424
DdeI CTNAG 1 cut(s) 549
DpnI GATC 2 cut(s) 387, 567
DpnII GATC 2 cut(s) 385, 565
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 475
Eco47III AGCGCT 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 352, 460
EcoT14I CCWWGG 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 3 cut(s) 208, 271, 299
FaqI GGGAC 2 cut(s) 23, 71
FatI CATG 3 cut(s) 204, 267, 295
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 3 cut(s) 22, 315, 484
FokI GGATG 3 cut(s) 116, 275, 614
Fsp4HI GCNGC 3 cut(s) 22, 315, 484
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 107
GluI GCNGC 3 cut(s) 22, 315, 484
GsuI CTGGAG 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 2 cut(s) 418, 475
HapII CCGG 2 cut(s) 180, 415
HgaI GACGC 2 cut(s) 53, 68
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 2 cut(s) 45, 60
Hin1II CATG 3 cut(s) 208, 271, 299
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 3 cut(s) 83, 465, 572
HpaII CCGG 2 cut(s) 180, 415
HphI GGTGA 4 cut(s) 92, 142, 395, 517
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 5 cut(s) 180, 268, 296, 469, 569
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 3 cut(s) 71, 473, 551
HpyCH4III ACNGT 2 cut(s) 439, 536
HpyCH4IV ACGT 3 cut(s) 12, 29, 69
HpyCH4V TGCA 2 cut(s) 24, 486
HpyF3I CTNAG 1 cut(s) 549
HpySE526I ACGT 3 cut(s) 12, 29, 69
Hsp92I GRCGYC 2 cut(s) 45, 60
Hsp92II CATG 3 cut(s) 208, 271, 299
HspAI GCGC 1 cut(s) 106
Kpn2I TCCGGA 1 cut(s) 179
KpnI GGTACC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 414
KroNI GCCGGC 1 cut(s) 416
Kzo9I GATC 2 cut(s) 385, 565
LmnI GCTCC 2 cut(s) 182, 307
Lsp1109I GCAGC 3 cut(s) 8, 301, 470
LweI GCATC 2 cut(s) 289, 592
MaeI CTAG 1 cut(s) 326
MaeII ACGT 3 cut(s) 12, 29, 69
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 387, 567
MboI GATC 2 cut(s) 385, 565
MboII GAAGA 3 cut(s) 236, 283, 575
MflI RGATCY 1 cut(s) 565
MluCI AATT 3 cut(s) 306, 611, 636
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 475
MroI TCCGGA 1 cut(s) 179
MroNI GCCGGC 1 cut(s) 414
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 2 cut(s) 180, 415
MspR9I CCNGG 2 cut(s) 354, 462
Mva1269I GAATGC 2 cut(s) 327, 405
MvaI CCWGG 2 cut(s) 354, 462
NaeI GCCGGC 1 cut(s) 416
NdeII GATC 2 cut(s) 385, 565
NgoMIV GCCGGC 1 cut(s) 414
NlaIII CATG 3 cut(s) 208, 271, 299
NlaIV GGNNCC 4 cut(s) 101, 178, 513, 538
NmuCI GTSAC 1 cut(s) 80
PagI TCATGA 2 cut(s) 267, 295
PceI AGGCCT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 2 cut(s) 327, 405
PdiI GCCGGC 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 465, 572
Pfl23II CGTACG 1 cut(s) 30
PkrI GCNGC 3 cut(s) 23, 316, 485
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 352, 460
PspGI CCWGG 2 cut(s) 352, 460
PspLI CGTACG 1 cut(s) 30
PspN4I GGNNCC 4 cut(s) 101, 178, 513, 538
PstI CTGCAG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 3 cut(s) 32, 101, 425
RsaNI GTAC 3 cut(s) 31, 100, 424
RseI CAYNNNNRTG 1 cut(s) 587
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 3 cut(s) 22, 315, 484
Sau3AI GATC 2 cut(s) 385, 565
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 354, 462
SfaNI GCATC 2 cut(s) 289, 592
SfcI CTRYAG 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 587
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 3 cut(s) 306, 611, 636
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 3 cut(s) 64, 121, 133
SspMI CTAG 1 cut(s) 326
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 2 cut(s) 352, 460
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 2 cut(s) 439, 536
TaiI ACGT 3 cut(s) 15, 32, 72
TaqI TCGA 2 cut(s) 17, 93
TasI AATT 3 cut(s) 306, 611, 636
TfiI GAWTC 2 cut(s) 465, 572
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 3 cut(s) 21, 314, 483
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 6 cut(s) 118, 130, 237, 248, 284, 571
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.