Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002378

Physical Location & Seq

Genomic Coordinates Reverse (-)

63093775 .. 63107268

Gene Structure 13494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCCGAGGACATGGCGAAAGATGGATATGAAGACATAATGAACATAGACATCTCATCAGTGGCTATCAACCTCATGAAGACCAGAAACAAGCACATCCCTCAGTTGAAATACAAGCAAATGGATGTGAGGGATATGAGCTTCTTCCCAGATGAATCCTTTGACGGTATTATTGATAAAGGAACTCTTGATTCATTGATGTGTGGCAGTGATGCTCCGATTAGCGCTGCCCGAATGCTAGGGGAAGTGAGTAGGCTTCTTAAACCTGGAGGGGTCTATATTTTGATAACTTATGGTGATCCTAAAGTTAGAATGCCTCATTTGAGCCGGCCAGTGTACGACTGGAATACTGTTCTGTATATCCAACCCAGACCAGGATTCCAGAGGCCTGAAGGCTGCAATTCCTCAAGGAAGTCATATTTGGAACCTGTTCCTATCACCGAGAATGGTTCCCTTCCAGCTGAGTTTGTTATGGAAGATCCAGATTCACACTTCATTTATGTGTGTAAAAAGAAGGATGCCAAGGAATTACTTTCACTATATAGATTGAGAATTGAAGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

188

Amino Acids

21.43

Weight (kDa)

5.44

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_25	PF13649	2 - 91	3.1e-08	Methyltransferase domain
Methyltransf_11	PF08241	3 - 94	7.7e-11	Methyltransferase domain
Methyltransf_31	PF13847	12 - 99	2.2e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60910 AT3G60910
fragaria_vesca	FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670
malus_domestica	MD02G1301500.v1.1 MD07G1022400.v1.1
prunus_persica	Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1
pyrus_communis	pycom02g25330 pycom02g25360
rosa_chinensis	RchiOBHm_Chr1g0318081 RchiOBHm_Chr1g0318181
rosa_laevigata	RLG00000030554
rosa_multiflora	Rmu_sc0005106.1_g000005
rosa_roxburghii	Rroxscaffold_4G00329520 Rroxscaffold_4G00329750 Rroxscaffold_4G00329790
rosa_rugosa	Rorug01G0019700 Rorug01G0019700 Rorug01G0019700
rosa_samantha	Rh1AG030800 Rh1AG031400 Rh1BG027000 Rh1CG029600 Rh1CG030100 Rh1DG039800 Rh1DG040700
rosa_wichuraiana	Rw1G002430 Rw1G002470 Rw1G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	293, 473
AcoI	YGGCCR	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	338
AfeI	AGCGCT	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	109, 557
AjnI	CCWGG	2 cut(s)	265, 373
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	2 cut(s)	141, 461
AluI	AGCT	2 cut(s)	141, 461
AlwI	GGATC	2 cut(s)	293, 473
Aor51HI	AGCGCT	1 cut(s)	226
AoxI	GGCC	2 cut(s)	329, 386
ApeKI	GCWGC	2 cut(s)	227, 396
Asp700I	GAANNNNTTC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	308, 430
BbsI	GAAGAC	2 cut(s)	39, 86
BbvI	GCAGC	2 cut(s)	214, 383
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	2 cut(s)	267, 375
BfaI	CTAG	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	2 cut(s)	228, 397
BlsI	GCNGC	2 cut(s)	229, 398
Bme1390I	CCNGG	2 cut(s)	267, 375
BmiI	GGNNCC	2 cut(s)	426, 451
BmrFI	CCNGG	2 cut(s)	267, 375
BmsI	GCATC	2 cut(s)	202, 508
BpiI	GAAGAC	2 cut(s)	39, 86
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	6, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	2 cut(s)	332, 347
BseBI	CCWGG	2 cut(s)	267, 375
BseDI	CCNNGG	2 cut(s)	6, 522
BseGI	GGATG	3 cut(s)	96, 130, 523
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	2 cut(s)	116, 453
BseNI	ACTGG	2 cut(s)	332, 347
BseXI	GCAGC	2 cut(s)	214, 383
BshFI	GGCC	2 cut(s)	331, 388
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmI	GAATGC	2 cut(s)	240, 318
BsnI	GGCC	2 cut(s)	331, 388
Bsp143I	GATC	2 cut(s)	298, 478
BspANI	GGCC	2 cut(s)	331, 388
BspCNI	CTCAG	2 cut(s)	115, 454
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	426, 451
BspPI	GGATC	2 cut(s)	293, 473
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	332, 347
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	6, 522
BssMI	GATC	2 cut(s)	298, 478
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	267, 375
Bst4CI	ACNGT	2 cut(s)	167, 352
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	102, 462
BstF5I	GGATG	3 cut(s)	96, 130, 523
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	301, 481
BstMBI	GATC	2 cut(s)	298, 478
BstNI	CCWGG	2 cut(s)	267, 375
BstSCI	CCNGG	2 cut(s)	265, 373
BstV1I	GCAGC	2 cut(s)	214, 383
BstV2I	GAAGAC	2 cut(s)	39, 86
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	331, 388
BtsCI	GGATG	3 cut(s)	96, 130, 523
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	66, 214, 339
Cac8I	GCNNGC	1 cut(s)	329
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	13, 76
CviJI	RGCY	8 cut(s)	65, 141, 256, 327, 331, 388, 396, 461
CviKI_1	RGCY	8 cut(s)	65, 141, 256, 327, 331, 388, 396, 461
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	102, 462
DpnI	GATC	2 cut(s)	300, 480
DpnII	GATC	2 cut(s)	298, 478
EaeI	YGGCCR	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	388
Eco47III	AGCGCT	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	265, 373
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	2 cut(s)	16, 79
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	2 cut(s)	12, 75
Fnu4HI	GCNGC	2 cut(s)	228, 397
FokI	GGATG	3 cut(s)	83, 137, 530
Fsp4HI	GCNGC	2 cut(s)	228, 397
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	2 cut(s)	228, 397
GsuI	CTGGAG	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	331, 388
HapII	CCGG	1 cut(s)	328
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	16, 79
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	4 cut(s)	155, 191, 378, 485
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	308, 430
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	7, 219
Hpy188III	TCNNGA	4 cut(s)	76, 188, 382, 482
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	386, 464, 508
HpyCH4III	ACNGT	2 cut(s)	167, 352
HpyCH4V	TGCA	1 cut(s)	399
HpyF3I	CTNAG	2 cut(s)	102, 462
Hsp92II	CATG	2 cut(s)	16, 79
HspAI	GCGC	1 cut(s)	225
KroI	GCCGGC	1 cut(s)	327
KroNI	GCCGGC	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	298, 478
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	2 cut(s)	214, 383
LweI	GCATC	2 cut(s)	202, 508
MaeI	CTAG	1 cut(s)	239
MalI	GATC	2 cut(s)	300, 480
MboI	GATC	2 cut(s)	298, 478
MboII	GAAGA	4 cut(s)	44, 91, 136, 488
MflI	RGATCY	1 cut(s)	478
MluCI	AATT	3 cut(s)	400, 527, 552
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	7 cut(s)	83, 111, 123, 263, 327, 378, 415
MroNI	GCCGGC	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	2 cut(s)	199, 500
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	267, 375
Mva1269I	GAATGC	2 cut(s)	240, 318
MvaI	CCWGG	2 cut(s)	267, 375
NaeI	GCCGGC	1 cut(s)	329
NdeII	GATC	2 cut(s)	298, 478
NgoMIV	GCCGGC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	16, 79
NlaIV	GGNNCC	2 cut(s)	426, 451
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	388
PctI	GAATGC	2 cut(s)	240, 318
PdiI	GCCGGC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	4 cut(s)	155, 191, 378, 485
PkrI	GCNGC	2 cut(s)	229, 398
Psp6I	CCWGG	2 cut(s)	265, 373
PspGI	CCWGG	2 cut(s)	265, 373
PspN4I	GGNNCC	2 cut(s)	426, 451
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	199, 500
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	228, 397
Sau3AI	GATC	2 cut(s)	298, 478
ScrFI	CCNGG	2 cut(s)	267, 375
SetI	ASST	5 cut(s)	75, 143, 268, 430, 463
SfaNI	GCATC	2 cut(s)	202, 508
SmiMI	CAYNNNNRTG	2 cut(s)	199, 500
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	3 cut(s)	400, 527, 552
SseBI	AGGCCT	1 cut(s)	388
SspMI	CTAG	1 cut(s)	239
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	265, 373
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	167, 352
TasI	AATT	3 cut(s)	400, 527, 552
TfiI	GAWTC	4 cut(s)	155, 191, 378, 485
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	3 cut(s)	66, 214, 339
TseI	GCWGC	2 cut(s)	227, 396
TspDTI	ATGAA	6 cut(s)	45, 56, 92, 168, 183, 484
TspRI	CASTG	3 cut(s)	66, 214, 339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.