Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002378

Physical Location & Seq

Genomic Coordinates Reverse (-)

23319094 .. 23321771

Gene Structure 2678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25330.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTGAGGGACGAGTCGAGCTGCAACACCTACAACTATAGTGACGCCCTCTACTGGGACGCCCGCTACGTCCAAGAAGGTGGCTCCTTCGACTGGTACCAGCGCTACTCTTCCCTCCGCCCTTTCGTCCGCCACTTCATCCCCGTCTCCTCTTCTGTTCTCATGGTCGGCTGCGGCAATGCCGTTATGTCCGAGGACATGGTCAAGGATGGATACGAAGACATAATGAACATTGACGTTTCATCAGTGGCTATCAACATGATGAGAAGCAAATATGAGCACATACCTCAGCTGAAATACATGCAAATGGATGTTAGAGATATGAGTTTCTTCCCAGATGATTCGTTTGACGGTGTCATTGATAAAGGAACTCTTGATTCACTGATGTGTGGCAACAATGCTCCAATTAGTGCTGTTCAAATGTTAGGGGAAGTGAGCAGGCTTCTAAAACCTGGAGGGATCTATATGTTGCAGATAACGTACGGTGATCCTAAAGTAAGAATGCCTCATTTGAGACGGCCAGTGTACAACTGGAAAATTTGTTTGTACATTATACCCAGACCAGGATTCCAAACGCCTGAAGGCTGTGGTTTGTCATCAAAATCAGATCTGGAACCCGTTCCTATCACCGAGAAGGGCTTACTTCCAGCTGATTTTGTTTTGGAAGATCCAGATTGTCATTTCATATATGTGTGTAAAAAGGACGATGCGGAGCTAGTAATCCACCAACATCAGTTGACAGTTGATGACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

252

Amino Acids

28.63

Weight (kDa)

4.85

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60910 AT3G60910
fragaria_vesca	FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670
malus_domestica	MD02G1301500.v1.1 MD07G1022400.v1.1
prunus_persica	Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1
pyrus_communis	pycom02g25330 pycom02g25360
rosa_chinensis	RchiOBHm_Chr1g0318081 RchiOBHm_Chr1g0318181
rosa_laevigata	RLG00000030554
rosa_multiflora	Rmu_sc0005106.1_g000005
rosa_roxburghii	Rroxscaffold_4G00329520 Rroxscaffold_4G00329750 Rroxscaffold_4G00329790
rosa_rugosa	Rorug01G0019700 Rorug01G0019700 Rorug01G0019700
rosa_samantha	Rh1AG030800 Rh1AG031400 Rh1BG027000 Rh1CG029600 Rh1CG030100 Rh1DG039800 Rh1DG040700
rosa_wichuraiana	Rw1G002430 Rw1G002470 Rw1G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	96
AciI	CCGC	5 cut(s)	64, 118, 130, 174, 710
AclWI	GGATC	3 cut(s)	467, 482, 662
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	2 cut(s)	45, 60
AfaI	GTAC	4 cut(s)	98, 482, 527, 548
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	4 cut(s)	54, 55, 93, 563
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	451, 562
AleI	CACNNNNGTG	1 cut(s)	385
AluBI	AGCT	4 cut(s)	21, 292, 650, 715
AluI	AGCT	4 cut(s)	21, 292, 650, 715
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	2 cut(s)	151, 508
AlwI	GGATC	3 cut(s)	467, 482, 662
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	21, 171
ApoI	RAATTY	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	618
Asp718I	GGTACC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	497, 619
BanI	GGYRCC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	8, 158
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	2 cut(s)	167, 533
BciT130I	CCWGG	2 cut(s)	453, 564
BciVI	GTATCC	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	151, 508
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	1 cut(s)	37
BfoI	RGCGCY	1 cut(s)	106
BfuI	GTATCC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	3 cut(s)	22, 172, 175
BlsI	GCNGC	3 cut(s)	23, 173, 176
Bme1390I	CCNGG	2 cut(s)	453, 564
BmiI	GGNNCC	3 cut(s)	85, 98, 615
BmrFI	CCNGG	2 cut(s)	453, 564
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	697
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	288
BsaHI	GRCGYC	2 cut(s)	45, 60
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 55, 93, 563
Bse1I	ACTGG	4 cut(s)	59, 98, 521, 536
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	453, 564
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	138, 214, 316
BseLI	CCNNNNNNNGG	4 cut(s)	54, 55, 93, 563
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	4 cut(s)	59, 98, 521, 536
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	8, 158
BshFI	GGCC	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	282
BsiWI	CGTACG	1 cut(s)	480
BslFI	GGGAC	2 cut(s)	23, 71
BslI	CCNNNNNNNGG	4 cut(s)	54, 55, 93, 563
BsmAI	GTCTC	2 cut(s)	151, 508
BsmBI	CGTCTC	2 cut(s)	151, 508
BsmFI	GGGAC	2 cut(s)	23, 71
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp1407I	TGTACA	2 cut(s)	525, 546
Bsp143I	GATC	4 cut(s)	459, 487, 607, 667
BspACI	CCGC	5 cut(s)	64, 118, 130, 174, 710
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	3 cut(s)	85, 98, 615
BspPI	GGATC	3 cut(s)	467, 482, 662
BspT107I	GGYRCC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	184
BsrGI	TGTACA	2 cut(s)	525, 546
BsrI	ACTGG	4 cut(s)	59, 98, 521, 536
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	4 cut(s)	459, 487, 607, 667
BssNI	GRCGYC	2 cut(s)	45, 60
Bst2UI	CCWGG	2 cut(s)	453, 564
Bst4CI	ACNGT	3 cut(s)	353, 485, 742
Bst6I	CTCTTC	2 cut(s)	115, 157
BstACI	GRCGYC	2 cut(s)	45, 60
BstAUI	TGTACA	2 cut(s)	525, 546
BstC8I	GCNNGC	2 cut(s)	64, 440
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	138, 214, 316
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	4 cut(s)	462, 490, 610, 670
BstMAI	GTCTC	2 cut(s)	151, 508
BstMBI	GATC	4 cut(s)	459, 487, 607, 667
BstNI	CCWGG	2 cut(s)	453, 564
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	451, 562
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	8, 158
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	3 cut(s)	459, 607, 667
BstXI	CCANNNNNNTGG	1 cut(s)	80
BstYI	RGATCY	3 cut(s)	459, 607, 667
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	520
BtsCI	GGATG	3 cut(s)	138, 214, 316
BtsIMutI	CAGTG	3 cut(s)	252, 380, 528
Cac8I	GCNNGC	2 cut(s)	64, 440
CfoI	GCGC	1 cut(s)	105
CseI	GACGC	2 cut(s)	53, 68
Csp6I	GTAC	4 cut(s)	97, 481, 526, 547
CviAII	CATG	4 cut(s)	163, 199, 259, 301
CviQI	GTAC	4 cut(s)	97, 481, 526, 547
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	4 cut(s)	461, 489, 609, 669
DpnII	GATC	4 cut(s)	459, 487, 607, 667
EaeI	YGGCCR	1 cut(s)	518
Eam1104I	CTCTTC	2 cut(s)	115, 157
EarI	CTCTTC	2 cut(s)	115, 157
EciI	GGCGGA	2 cut(s)	107, 119
Eco47III	AGCGCT	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	451, 562
Esp3I	CGTCTC	2 cut(s)	151, 508
FaeI	CATG	4 cut(s)	166, 202, 262, 304
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	2 cut(s)	23, 71
FatI	CATG	4 cut(s)	162, 198, 258, 300
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	3 cut(s)	22, 172, 175
FokI	GGATG	3 cut(s)	125, 221, 323
Fsp4HI	GCNGC	3 cut(s)	22, 172, 175
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	3 cut(s)	22, 172, 175
GsuI	CTGGAG	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	520
HgaI	GACGC	2 cut(s)	53, 68
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	45, 60
Hin1II	CATG	4 cut(s)	166, 202, 262, 304
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	738
HindII	GTYRAC	1 cut(s)	738
HinfI	GANTC	4 cut(s)	14, 341, 377, 567
HphI	GGTGA	2 cut(s)	497, 619
Hpy166II	GTNNAC	2 cut(s)	526, 738
Hpy188I	TCNGA	2 cut(s)	193, 607
Hpy188III	TCNNGA	3 cut(s)	374, 611, 671
Hpy8I	GTNNAC	2 cut(s)	526, 738
HpyAV	CCTTC	4 cut(s)	71, 97, 575, 628
HpyCH4III	ACNGT	3 cut(s)	353, 485, 742
HpyCH4IV	ACGT	3 cut(s)	69, 237, 479
HpyCH4V	TGCA	3 cut(s)	24, 304, 472
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	3 cut(s)	69, 237, 479
Hsp92I	GRCGYC	2 cut(s)	45, 60
Hsp92II	CATG	4 cut(s)	166, 202, 262, 304
HspAI	GCGC	1 cut(s)	103
KpnI	GGTACC	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	459, 487, 607, 667
LmnI	GCTCC	3 cut(s)	89, 406, 712
Lsp1109I	GCAGC	2 cut(s)	8, 158
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	3 cut(s)	69, 237, 479
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	4 cut(s)	461, 489, 609, 669
MboI	GATC	4 cut(s)	459, 487, 607, 667
MboII	GAAGA	5 cut(s)	102, 144, 230, 322, 677
MflI	RGATCY	3 cut(s)	459, 607, 667
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	2 cut(s)	405, 537
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	7 cut(s)	59, 125, 160, 187, 297, 449, 516
MroXI	GAANNNNTTC	1 cut(s)	618
MslI	CAYNNNNRTG	3 cut(s)	305, 385, 689
MspA1I	CMGCKG	2 cut(s)	292, 650
MspR9I	CCNGG	2 cut(s)	453, 564
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	453, 564
NdeII	GATC	4 cut(s)	459, 487, 607, 667
NlaIII	CATG	4 cut(s)	166, 202, 262, 304
NlaIV	GGNNCC	3 cut(s)	85, 98, 615
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	341, 377, 567
Pfl23II	CGTACG	1 cut(s)	480
PflFI	GACNNNGTC	2 cut(s)	200, 353
PkrI	GCNGC	3 cut(s)	23, 173, 176
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	451, 562
PspGI	CCWGG	2 cut(s)	451, 562
PspLI	CGTACG	1 cut(s)	480
PspN4I	GGNNCC	3 cut(s)	85, 98, 615
PsuI	RGATCY	3 cut(s)	459, 607, 667
PsyI	GACNNNGTC	2 cut(s)	200, 353
PvuII	CAGCTG	2 cut(s)	292, 650
RsaI	GTAC	4 cut(s)	98, 482, 527, 548
RsaNI	GTAC	4 cut(s)	97, 481, 526, 547
RseI	CAYNNNNRTG	3 cut(s)	305, 385, 689
SatI	GCNGC	3 cut(s)	22, 172, 175
Sau3AI	GATC	4 cut(s)	459, 487, 607, 667
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	453, 564
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	37
SmiMI	CAYNNNNRTG	3 cut(s)	305, 385, 689
Sse9I	AATT	2 cut(s)	405, 537
SsiI	CCGC	5 cut(s)	64, 118, 130, 174, 710
SspMI	CTAG	1 cut(s)	716
StyD4I	CCNGG	2 cut(s)	451, 562
TaaI	ACNGT	3 cut(s)	353, 485, 742
TaiI	ACGT	3 cut(s)	72, 240, 482
TaqI	TCGA	2 cut(s)	17, 90
TasI	AATT	2 cut(s)	405, 537
TatI	WGTACW	2 cut(s)	525, 546
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	3 cut(s)	341, 377, 567
TscAI	CASTG	3 cut(s)	252, 387, 528
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	2 cut(s)	21, 171
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	127, 231, 242, 673
TspRI	CASTG	3 cut(s)	252, 387, 528
Tth111I	GACNNNGTC	2 cut(s)	200, 353
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.