Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002378

Physical Location & Seq

Genomic Coordinates Forward (+)

5941952 .. 5943772

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG029600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATGAGGGACGTGTCGAGCTGCAACACGTACGATTACGGAGACGCCCAATACTGGGACGCCCGCTACGTCCAAGAAGGTGACTCCTTATTCGACTGGTACCAGCGCTACTCTGCTCTCCGCCCTTTCATCCGCAACTTCATTCCCCTCACCTCCTCTCCTGTTCTCGTCGTCGGCTCCGGCAATGCCGTTATGTCGGAGGACATGGCGAAAGATGGATATGAAGACATAATGAACATTGACATCTCATCAGTGGCTATCAACCTCATGAAGACCAGAAACAAGCACATTCCTCAGTTGAAAGGTAACCAAACTCCTCGTTGGAATCTCTACCCACTACAGTTCTATGTTGTATTGTCAATGGAAACATTCAGCGATGTAGAGGAACATTTTAGAATAAAATATAATCATGTAGCCAGGAGACTATCTTGGAATGGCAGAAATGGTAGACGTATAAGTAGAGCAAGAGTGGAGCTGGGTGATACGTTGATGGAGAAGAATCTACTACAAAGTAGGACTGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

175

Amino Acids

20.47

Weight (kDa)

8.66

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60910 AT3G60910
fragaria_vesca	FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670 FvH4_7g01670
malus_domestica	MD02G1301500.v1.1 MD07G1022400.v1.1
prunus_persica	Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1 Prupe.2G023000_v2.0.a1
pyrus_communis	pycom02g25330 pycom02g25360
rosa_chinensis	RchiOBHm_Chr1g0318081 RchiOBHm_Chr1g0318181
rosa_laevigata	RLG00000030554
rosa_multiflora	Rmu_sc0005106.1_g000005
rosa_roxburghii	Rroxscaffold_4G00329520 Rroxscaffold_4G00329750 Rroxscaffold_4G00329790
rosa_rugosa	Rorug01G0019700 Rorug01G0019700 Rorug01G0019700
rosa_samantha	Rh1AG030800 Rh1AG031400 Rh1BG027000 Rh1CG029600 Rh1CG030100 Rh1DG039800 Rh1DG040700
rosa_wichuraiana	Rw1G002430 Rw1G002470 Rw1G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	3 cut(s)	64, 121, 133
AcyI	GRCGYC	2 cut(s)	45, 60
AfaI	GTAC	2 cut(s)	32, 101
AfeI	AGCGCT	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	54, 55
AflIII	ACRYGT	2 cut(s)	12, 27
AgsI	TTSAA	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	2 cut(s)	21, 475
AluI	AGCT	2 cut(s)	21, 475
Alw26I	GTCTC	2 cut(s)	36, 415
Aor51HI	AGCGCT	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	21
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp718I	GGTACC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	92, 142, 491
BanI	GGYRCC	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	231, 278
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	2 cut(s)	209, 484
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	36, 415
BfmI	CTRYAG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	418
BmgBI	CACGTC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	101, 178
BmrFI	CCNGG	1 cut(s)	418
BmrI	ACTGGG	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	231, 278
BsaAI	YACGTR	1 cut(s)	30
BsaHI	GRCGYC	2 cut(s)	45, 60
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 55
Bse1I	ACTGG	2 cut(s)	59, 101
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	54, 55
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	59, 101
BseRI	GAGGAG	2 cut(s)	145, 306
BseXI	GCAGC	1 cut(s)	8
BseYI	CCCAGC	1 cut(s)	475
BshNI	GGYRCC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	180
BsiWI	CGTACG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	23, 71
BslI	CCNNNNNNNGG	2 cut(s)	54, 55
BsmAI	GTCTC	2 cut(s)	36, 415
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	23, 71
BspACI	CCGC	3 cut(s)	64, 121, 133
BspCNI	CTCAG	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	101, 178
BspT107I	GGYRCC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	59, 101
BssNI	GRCGYC	2 cut(s)	45, 60
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	342, 520
BstACI	GRCGYC	2 cut(s)	45, 60
BstBAI	YACGTR	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	294
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	108
BstMAI	GTCTC	2 cut(s)	36, 415
BstNI	CCWGG	1 cut(s)	418
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	231, 278
BtgZI	GCGATG	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	64
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	108
CseI	GACGC	2 cut(s)	53, 68
Csp6I	GTAC	2 cut(s)	31, 100
CviAII	CATG	3 cut(s)	205, 268, 410
CviJI	RGCY	5 cut(s)	21, 177, 257, 416, 475
CviKI_1	RGCY	5 cut(s)	21, 177, 257, 416, 475
CviQI	GTAC	2 cut(s)	31, 100
DdeI	CTNAG	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	110
Eco47III	AGCGCT	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	3 cut(s)	208, 271, 413
FaiI	YATR	9 cut(s)	194, 206, 222, 230, 269, 348, 405, 411, 455
FaqI	GGGAC	2 cut(s)	23, 71
FatI	CATG	3 cut(s)	204, 267, 409
FauI	CCCGC	1 cut(s)	71
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	22
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	22
GsaI	CCCAGC	1 cut(s)	479
HaeII	RGCGCY	1 cut(s)	109
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	2 cut(s)	53, 68
HhaI	GCGC	1 cut(s)	108
Hin1I	GRCGYC	2 cut(s)	45, 60
Hin1II	CATG	3 cut(s)	208, 271, 413
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	83, 325, 499
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	3 cut(s)	92, 142, 491
Hpy166II	GTNNAC	2 cut(s)	449, 523
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	2 cut(s)	449, 523
Hpy99I	CGWCG	2 cut(s)	173, 176
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	342, 520
HpyCH4IV	ACGT	5 cut(s)	12, 29, 69, 451, 485
HpyCH4V	TGCA	1 cut(s)	24
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	5 cut(s)	12, 29, 69, 451, 485
Hsp92I	GRCGYC	2 cut(s)	45, 60
Hsp92II	CATG	3 cut(s)	208, 271, 413
HspAI	GCGC	1 cut(s)	106
KpnI	GGTACC	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	182, 472
LpnPI	CCDG	9 cut(s)	40, 82, 116, 174, 193, 289, 403, 430, 461
Lsp1109I	GCAGC	1 cut(s)	8
MaeII	ACGT	5 cut(s)	12, 29, 69, 451, 485
MaeIII	GTNAC	2 cut(s)	80, 305
MboII	GAAGA	3 cut(s)	236, 283, 508
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	177, 302
MnlI	CCTC	8 cut(s)	158, 163, 166, 193, 275, 303, 327, 376
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	418
NlaIII	CATG	3 cut(s)	208, 271, 413
NlaIV	GGNNCC	2 cut(s)	101, 178
NmuCI	GTSAC	1 cut(s)	80
PagI	TCATGA	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	325, 499
Pfl23II	CGTACG	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	416
PspEI	GGTNACC	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	416
PspLI	CGTACG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	101, 178
RsaI	GTAC	2 cut(s)	32, 101
RsaNI	GTAC	2 cut(s)	31, 100
SatI	GCNGC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	338
SsiI	CCGC	3 cut(s)	64, 121, 133
StyD4I	CCNGG	1 cut(s)	416
TaaI	ACNGT	2 cut(s)	342, 520
TaiI	ACGT	5 cut(s)	15, 32, 72, 454, 488
TaqI	TCGA	2 cut(s)	17, 93
TfiI	GAWTC	2 cut(s)	325, 499
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	5 cut(s)	118, 130, 237, 248, 284
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.