Rw1G002470

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002378
Physical Location & Seq
Forward (+)
4496945 .. 4500474
3530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002470.1

Sequence Viewer

Length: 540 bp
ATGATGAGGGACGTGTCGAGCTGCAACACGTACGATTACGGAGACGCCCAATACTGGGACGCCCGCTACGTCCAGGAAGGTGACTCCTTATTCGACTGGTACCAGCGCTACTCTGCTCTCCGCCCTTTCATCCGCAACTTCATTCCCCTCACCTCCTCTCCTGTTCTCGTCGTCGGCTCCGGCAATGCCGTTATGTCCGAGGACATGGCCAAAGATGGATATGAAGACATAATGAACATTGACATCTCATCAGTGGCTATCAACCTCATGAAGACCAGAAACAAGCACATCCCTCAGTTGAAATACAAGCAAATGGATGTGAGTGATATGAGCTTCTTCCCAGATGAATCCTTTGACGGTATTATTGATAAAGTAAAGAGAGAAGAGAGACAACTCAAGATAGTTAGAACTTCAAATGCCATTTGCCCACTTGTCTGGGATGACATACTGATAATCTGTTTGGATATGTGGGAGTATGCTTATTATCTGGATTACAAGAATGACAGAGGAAAGATTGTGGTTTTATTTCTCTGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

179

Amino Acids

20.96

Weight (kDa)

4.72

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_25 PF13649 55 - 122 3.2e-08 Methyltransferase domain
Methyltransf_11 PF08241 56 - 122 3.8e-08 Methyltransferase domain
Sod_Fe_C PF02777 126 - 173 3e-11 Iron/manganese superoxide dismutases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 538
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 99
AciI CCGC 3 cut(s) 64, 121, 133
AcoI YGGCCR 1 cut(s) 207
AcyI GRCGYC 2 cut(s) 45, 60
AfaI GTAC 2 cut(s) 32, 101
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 54, 55
AflIII ACRYGT 2 cut(s) 12, 27
AgsI TTSAA 2 cut(s) 301, 414
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 2 cut(s) 21, 333
AluI AGCT 2 cut(s) 21, 333
Alw26I GTCTC 2 cut(s) 36, 382
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 92, 142
BalI TGGCCA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 231, 278
BbvI GCAGC 1 cut(s) 8
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 36, 382
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 101, 178
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 231, 278
BpuEI CTTGAG 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 45, 60
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 55
Bse1I ACTGG 2 cut(s) 59, 101
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 4 cut(s) 129, 288, 322, 445
BseLI CCNNNNNNNGG 2 cut(s) 54, 55
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 2 cut(s) 59, 101
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 8
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 180
BsiWI CGTACG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 23, 71
BslI CCNNNNNNNGG 2 cut(s) 54, 55
BsmAI GTCTC 2 cut(s) 36, 382
BsmBI CGTCTC 1 cut(s) 36
BsmFI GGGAC 2 cut(s) 23, 71
BsnI GGCC 1 cut(s) 209
BspACI CCGC 3 cut(s) 64, 121, 133
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 101, 178
BspT107I GGYRCC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 2 cut(s) 59, 101
BssECI CCNNGG 1 cut(s) 198
BssNI GRCGYC 2 cut(s) 45, 60
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 2 cut(s) 45, 60
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 4 cut(s) 129, 288, 322, 445
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstMAI GTCTC 2 cut(s) 36, 382
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 8
BstV2I GAAGAC 2 cut(s) 231, 278
BstXI CCANNNNNNTGG 1 cut(s) 435
BsuRI GGCC 1 cut(s) 209
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 4 cut(s) 129, 288, 322, 445
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 64
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 108
CseI GACGC 2 cut(s) 53, 68
Csp6I GTAC 2 cut(s) 31, 100
CviAII CATG 2 cut(s) 205, 268
CviJI RGCY 5 cut(s) 21, 177, 209, 257, 333
CviKI_1 RGCY 5 cut(s) 21, 177, 209, 257, 333
CviQI GTAC 2 cut(s) 31, 100
DdeI CTNAG 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 1 cut(s) 110
Eco47III AGCGCT 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 2 cut(s) 208, 271
FaqI GGGAC 2 cut(s) 23, 71
FatI CATG 2 cut(s) 204, 267
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 4 cut(s) 116, 275, 329, 452
Fsp4HI GCNGC 1 cut(s) 22
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 22
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 180
HgaI GACGC 2 cut(s) 53, 68
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 2 cut(s) 45, 60
Hin1II CATG 2 cut(s) 208, 271
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 2 cut(s) 83, 347
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 92, 142
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 3 cut(s) 268, 397, 488
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 3 cut(s) 12, 29, 69
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 3 cut(s) 12, 29, 69
Hsp92I GRCGYC 2 cut(s) 45, 60
Hsp92II CATG 2 cut(s) 208, 271
HspAI GCGC 1 cut(s) 106
KpnI GGTACC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 8
MaeII ACGT 3 cut(s) 12, 29, 69
MaeIII GTNAC 1 cut(s) 80
MboII GAAGA 4 cut(s) 236, 283, 328, 395
MlsI TGGCCA 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 7 cut(s) 158, 163, 166, 193, 275, 303, 500
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
NlaIII CATG 2 cut(s) 208, 271
NlaIV GGNNCC 2 cut(s) 101, 178
NmuCI GTSAC 1 cut(s) 80
PagI TCATGA 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 1 cut(s) 347
Pfl23II CGTACG 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 30
PsiI TTATAA 1 cut(s) 538
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspLI CGTACG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 101, 178
RsaI GTAC 2 cut(s) 32, 101
RsaNI GTAC 2 cut(s) 31, 100
SatI GCNGC 1 cut(s) 22
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 74
SetI ASST 8 cut(s) 15, 23, 32, 72, 82, 155, 267, 335
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SsiI CCGC 3 cut(s) 64, 121, 133
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 3 cut(s) 15, 32, 72
TaqI TCGA 2 cut(s) 17, 93
TfiI GAWTC 1 cut(s) 347
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 6 cut(s) 118, 130, 237, 248, 284, 360
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.