Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003736

Physical Location & Seq

Genomic Coordinates Forward (+)

663277 .. 664096

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1008800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACTGCAAAGGTTGGCGCTGCATCCGCAGTCGAACCTCGCACTGTTGAGATGTCTGGTACAACGATGACACCTGCATCATCAGCTGGTACACAAAAGGTCTCCATGTTTGCTGCCAGGGCTGGATTTGTTATACCGAAAAACAAGCTATCGGGTTCACTTGTGCCTGTCTTTCGCGGAAGTAAAACCCTAGGAGCTGGTGATGCGCTTAGTGGAGAAAGTAAGAAACAGATTCAGAGGAAAACAAAATGGGGCCCTGATCTCACCCAGGATGCTTCTGTCAAAAAGGGAAGAGCTTTAGCTTATCAGACTCGGGTGGATCAAATTACACAAAAGGCTGAAATCTGGAATGTTAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 SF1-HH

Protein Analysis

121

Amino Acids

12.68

Weight (kDa)

10.48

Isoelectric Point (pI)

16.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32940
fragaria_vesca	FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840
malus_domestica	MD03G1008800.v1.1 MD03G1008900.v1.1 MD03G1009300.v1.1 MD03G1009900.v1.1 MD03G1010000.v1.1 MD03G1010200.v1.1
prunus_persica	Prupe.6G010100_v2.0.a1
pyrus_communis	pycom03g00890 pycom03g00910 pycom11g00730 pycom11g00740 pycom11g00780
rosa_chinensis	RchiOBHm_Chr5g0081541
rosa_laevigata	RLG00000036946
rosa_multiflora	Rmu_co8214750.1_g000001 Rmu_co8505191.1_g000001 Rmu_sc0028842.1_g000001 Rmu_sc0038011.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002010
rosa_rugosa	Rorug05G0477200
rosa_samantha	Rh5AG528500 Rh5BG553300 Rh5CG576100 Rh5DG563400
rosa_wichuraiana	Rw5G049170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	82
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	27, 177
AclWI	GGATC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	61, 91
AjnI	CCWGG	2 cut(s)	116, 267
AluBI	AGCT	5 cut(s)	86, 148, 197, 296, 302
AluI	AGCT	5 cut(s)	86, 148, 197, 296, 302
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	1 cut(s)	253
ApaI	GGGCCC	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	20, 113
AspA2I	CCTAGG	1 cut(s)	190
AspLEI	GCGC	2 cut(s)	20, 208
AspS9I	GGNCC	2 cut(s)	253, 254
AsuHPI	GGTGA	2 cut(s)	212, 256
AvaI	CYCGRG	1 cut(s)	312
AvrII	CCTAGG	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	7, 100
BciT130I	CCWGG	2 cut(s)	118, 269
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	2 cut(s)	21, 114
BlnI	CCTAGG	1 cut(s)	190
BlsI	GCNGC	2 cut(s)	22, 115
Bme1390I	CCNGG	2 cut(s)	118, 269
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	253, 254
BmiI	GGNNCC	2 cut(s)	254, 255
BmrFI	CCNGG	2 cut(s)	118, 269
BmsI	GCATC	4 cut(s)	32, 86, 193, 262
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	117, 190, 267
BseBI	CCWGG	2 cut(s)	118, 269
BseDI	CCNNGG	3 cut(s)	117, 190, 267
BseGI	GGATG	2 cut(s)	23, 277
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	7, 100
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	312
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	259, 319
BspACI	CCGC	2 cut(s)	27, 177
BspANI	GGCC	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	254, 255
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	117, 190, 267
BssMI	GATC	2 cut(s)	259, 319
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	118, 269
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	23, 277
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 208
BstKTI	GATC	2 cut(s)	262, 322
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	259, 319
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 83, 119, 203
BstNI	CCWGG	2 cut(s)	118, 269
BstSCI	CCNGG	2 cut(s)	116, 267
BstSLI	GKGCMC	1 cut(s)	257
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	7, 100
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	23, 277
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	82
CfoI	GCGC	2 cut(s)	20, 208
Cfr13I	GGNCC	2 cut(s)	253, 254
Csp6I	GTAC	2 cut(s)	60, 90
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	8 cut(s)	86, 122, 148, 197, 255, 296, 302, 338
CviKI_1	RGCY	8 cut(s)	86, 122, 148, 197, 255, 296, 302, 338
CviQI	GTAC	2 cut(s)	60, 90
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	2 cut(s)	261, 321
DpnII	GATC	2 cut(s)	259, 319
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	312
EcoO109I	RGGNCCY	2 cut(s)	253, 254
EcoRII	CCWGG	2 cut(s)	116, 267
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	109
FaiI	YATR	2 cut(s)	107, 134
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	21, 114
FokI	GGATG	2 cut(s)	10, 284
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	21, 114
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	2 cut(s)	19, 207
GluI	GCNGC	2 cut(s)	21, 114
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	255
HhaI	GCGC	2 cut(s)	20, 208
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	2 cut(s)	18, 206
HinP1I	GCGC	2 cut(s)	18, 206
HinfI	GANTC	2 cut(s)	232, 310
HphI	GGTGA	2 cut(s)	212, 256
Hpy166II	GTNNAC	2 cut(s)	92, 158
Hpy188I	TCNGA	2 cut(s)	237, 309
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	2 cut(s)	92, 158
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	8, 23, 77
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 83, 119, 203
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	2 cut(s)	18, 206
Kzo9I	GATC	2 cut(s)	259, 319
LguI	GCTCTTC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	2 cut(s)	7, 100
LweI	GCATC	4 cut(s)	32, 86, 193, 262
MaeI	CTAG	1 cut(s)	191
MalI	GATC	2 cut(s)	261, 321
MboI	GATC	2 cut(s)	259, 319
MboII	GAAGA	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	3 cut(s)	48, 231, 350
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	118, 269
MvaI	CCWGG	2 cut(s)	118, 269
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	26, 83, 119, 203
NdeII	GATC	2 cut(s)	259, 319
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	254, 255
PaqCI	CACCTGC	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	22, 115
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	116, 267
PspGI	CCWGG	2 cut(s)	116, 267
PspN4I	GGNNCC	2 cut(s)	254, 255
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	253, 254
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	61, 91
RsaNI	GTAC	2 cut(s)	60, 90
SapI	GCTCTTC	1 cut(s)	286
SatI	GCNGC	2 cut(s)	21, 114
Sau3AI	GATC	2 cut(s)	259, 319
Sau96I	GGNCC	2 cut(s)	253, 254
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	118, 269
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	9 cut(s)	15, 40, 76, 88, 102, 150, 199, 298, 304
SfaNI	GCATC	4 cut(s)	32, 86, 193, 262
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	27, 177
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	116, 267
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	232
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	2 cut(s)	20, 113
TspRI	CASTG	1 cut(s)	49
XmaJI	CCTAGG	1 cut(s)	190
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.