MD03G1010000.v1.1

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0003736
Physical Location & Seq
Forward (+)
765175 .. 768441
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1010000.v1.1.491

Sequence Viewer

Length: 351 bp
ATGGGAGAAGAAGCAAACAAAATAGCAGAGAGCAATTGGGTTGCGACTTGCGAGTCTACACTCCCAAAACGCAGCATTCTGATCATCCCTCTCCTTAATCCTCACACTGTTGTCCTTTTCCCAGAAAATTTTGTTTTTCAGAGGAAAACAAAATGGGGCTCTGATCTCACCCAAGATGCTTCTATCAAAAAGGGAAGAGCTTTAGCTTATCAGGCTGAAATAAAATCATCTGATGGGAGTGAAGTCCAGGGTGAATATGAAAACTTATACGTTCATATATCAGCTGACACATTTGAGAAAGTAGATGCAGCGGTTGCCGTAATTGAACTCTTAGGGTTGGTTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

117

Amino Acids

12.94

Weight (kDa)

4.96

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 56
AciI CCGC 1 cut(s) 311
AcsI RAATTY 1 cut(s) 127
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 200, 206, 284
AluI AGCT 3 cut(s) 200, 206, 284
ApeKI GCWGC 2 cut(s) 72, 308
ApoI RAATTY 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 160, 263
BanII GRGCYC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 84, 320
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 81
BisI GCNGC 2 cut(s) 73, 309
BlsI GCNGC 2 cut(s) 74, 310
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 166, 295
BsaJI CCNNGG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 84, 320
BsmI GAATGC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 81, 163
BspACI CCGC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 2 cut(s) 81, 163
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 331
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 2 cut(s) 84, 166
BstMBI GATC 2 cut(s) 81, 163
BstMWI GCNNNNNNNGC 2 cut(s) 212, 314
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 84, 320
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 105
CviJI RGCY 5 cut(s) 159, 200, 206, 215, 284
CviKI_1 RGCY 5 cut(s) 159, 200, 206, 215, 284
DdeI CTNAG 1 cut(s) 331
DpnI GATC 2 cut(s) 83, 165
DpnII GATC 2 cut(s) 81, 163
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 161
FaiI YATR 4 cut(s) 258, 268, 276, 278
FbaI TGATCA 1 cut(s) 81
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 73, 309
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 73, 309
GluI GCNGC 2 cut(s) 73, 309
HinfI GANTC 1 cut(s) 53
HphI GGTGA 2 cut(s) 160, 263
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 4 cut(s) 81, 141, 163, 232
Hpy8I GTNNAC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 314
HpyF3I CTNAG 1 cut(s) 331
HpySE526I ACGT 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 2 cut(s) 81, 163
LguI GCTCTTC 1 cut(s) 190
LpnPI CCDG 4 cut(s) 135, 197, 233, 260
Lsp1109I GCAGC 2 cut(s) 84, 320
LweI GCATC 2 cut(s) 166, 295
MaeII ACGT 1 cut(s) 270
MalI GATC 2 cut(s) 83, 165
MboI GATC 2 cut(s) 81, 163
MboII GAAGA 2 cut(s) 20, 207
MfeI CAATTG 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 3 cut(s) 34, 127, 321
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 3 cut(s) 99, 111, 135
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 2 cut(s) 284, 311
MspR9I CCNGG 1 cut(s) 248
MunI CAATTG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 212, 314
NdeII GATC 2 cut(s) 81, 163
PciSI GCTCTTC 1 cut(s) 190
PctI GAATGC 1 cut(s) 75
PkrI GCNGC 2 cut(s) 74, 310
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 73, 309
Sau3AI GATC 2 cut(s) 81, 163
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 161
SetI ASST 4 cut(s) 202, 208, 273, 286
SfaNI GCATC 2 cut(s) 166, 295
SgeI CNNG 7 cut(s) 60, 64, 134, 185, 224, 259, 260
Sse9I AATT 3 cut(s) 34, 127, 321
SsiI CCGC 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 273
TasI AATT 3 cut(s) 34, 127, 321
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 112
TseI GCWGC 2 cut(s) 72, 308
TspDTI ATGAA 2 cut(s) 263, 273
TspRI CASTG 1 cut(s) 112
XapI RAATTY 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.