Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038011.1

Orthogroup ID

OG0003736

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1077

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038011.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 658 bp

atgcttgttcaggtcaatgaatacccaacatacaatattcttggtctgatatatgggcctggaggtgataatcagaagcaattagaaaaggaaacaggagctaagattcaagtctatgggaccaaagcagagacgggagagaaggctgaaataaaacaatatgctgggagtgaaatccaggctgaatatgaaaagttatatgttcatgtatcagctgacacatttgagaaagtagatgcagctgttgctgtaatcgaactactagtcacctctgtatctggaaatctgtcggccgttgccaaaacagctttgggtgataataatgctcaagttcctagtcaaggccaggacagtaccacctcagatatggttccaactactatggtaaaccaaggaccggtgcaaccagcgacaggacctacacaaactccaccgcatgtgcagtttcagtaccctggtccatttttctccacgggccaacctggcagtccaatgaatctaccgggcttcacaccaatgaattctcaaaggcctattctcaacaatgctgcccatccatcaacatcgcctttcaacttgacaaacctgccgtcattatttgggcctccaccagctctttttccccagacacaacacctaccaccagcggttttgcagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 SF1-HH

Protein Analysis

219

Amino Acids

23.32

Weight (kDa)

4.95

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32940
fragaria_vesca	FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840
malus_domestica	MD03G1008800.v1.1 MD03G1008900.v1.1 MD03G1009300.v1.1 MD03G1009900.v1.1 MD03G1010000.v1.1 MD03G1010200.v1.1
prunus_persica	Prupe.6G010100_v2.0.a1
pyrus_communis	pycom03g00890 pycom03g00910 pycom11g00730 pycom11g00740 pycom11g00780
rosa_chinensis	RchiOBHm_Chr5g0081541
rosa_laevigata	RLG00000036946
rosa_multiflora	Rmu_co8214750.1_g000001 Rmu_co8505191.1_g000001 Rmu_sc0028842.1_g000001 Rmu_sc0038011.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002010
rosa_rugosa	Rorug05G0477200
rosa_samantha	Rh5AG528500 Rh5BG553300 Rh5CG576100 Rh5DG563400
rosa_wichuraiana	Rw5G049170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	594
AciI	CCGC	2 cut(s)	434, 647
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	520
AfaI	GTAC	2 cut(s)	355, 452
AfiI	CCNNNNNNNGG	3 cut(s)	341, 397, 413
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	110, 574
AhlI	ACTAGT	1 cut(s)	262
AjnI	CCWGG	5 cut(s)	58, 177, 345, 454, 481
AluBI	AGCT	5 cut(s)	101, 215, 242, 308, 614
AluI	AGCT	5 cut(s)	101, 215, 242, 308, 614
Alw26I	GTCTC	1 cut(s)	125
AoxI	GGCC	6 cut(s)	56, 291, 343, 475, 530, 602
ApeKI	GCWGC	3 cut(s)	239, 548, 655
ApoI	RAATTY	1 cut(s)	520
ArsI	GACNNNNNNTTYG	4 cut(s)	249, 281, 575, 607
AsiGI	ACCGGT	1 cut(s)	397
AspS9I	GGNCC	7 cut(s)	56, 120, 395, 416, 458, 475, 602
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	77, 259, 326
AvaII	GGWCC	4 cut(s)	120, 395, 416, 458
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BbvI	GCAGC	2 cut(s)	251, 535
BccI	CCATC	2 cut(s)	561, 565
BceAI	ACGGC	2 cut(s)	278, 574
BciT130I	CCWGG	5 cut(s)	60, 179, 347, 456, 483
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	262
BfaI	CTAG	2 cut(s)	263, 336
BfuAI	ACCTGC	1 cut(s)	594
BglI	GCCNNNNNGGC	1 cut(s)	483
BisI	GCNGC	3 cut(s)	240, 549, 656
BlsI	GCNGC	3 cut(s)	241, 550, 657
Bme1390I	CCNGG	6 cut(s)	60, 179, 347, 456, 483, 504
Bme18I	GGWCC	4 cut(s)	120, 395, 416, 458
BmgT120I	GGNCC	7 cut(s)	56, 120, 395, 416, 458, 475, 602
BmiI	GGNNCC	2 cut(s)	121, 372
BmrFI	CCNGG	6 cut(s)	60, 179, 347, 456, 483, 504
BmsI	GCATC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	504
BsaJI	CCNNGG	3 cut(s)	391, 454, 471
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 397, 413
Bse118I	RCCGGY	1 cut(s)	397
BseBI	CCWGG	5 cut(s)	60, 179, 347, 456, 483
BseDI	CCNNGG	3 cut(s)	391, 454, 471
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	3 cut(s)	341, 397, 413
BseMII	CTCAG	1 cut(s)	375
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	251, 535
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	6 cut(s)	58, 293, 345, 477, 532, 604
BshTI	ACCGGT	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	398, 503
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	3 cut(s)	341, 397, 413
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	6 cut(s)	58, 293, 345, 477, 532, 604
BspACI	CCGC	2 cut(s)	434, 647
BspANI	GGCC	6 cut(s)	58, 293, 345, 477, 532, 604
BspCNI	CTCAG	1 cut(s)	374
BspLI	GGNNCC	2 cut(s)	121, 372
BspMI	ACCTGC	1 cut(s)	594
BsrFI	RCCGGY	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	3 cut(s)	391, 454, 471
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	5 cut(s)	60, 179, 347, 456, 483
Bst4CI	ACNGT	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstDEI	CTNAG	2 cut(s)	102, 361
BstDSI	CCRYGG	1 cut(s)	471
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	553
BstMAI	GTCTC	1 cut(s)	125
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 305, 483
BstNI	CCWGG	5 cut(s)	60, 179, 347, 456, 483
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	6 cut(s)	58, 177, 345, 454, 481, 502
BstV1I	GCAGC	2 cut(s)	251, 535
BstZI	CGGCCG	1 cut(s)	291
BsuRI	GGCC	6 cut(s)	58, 293, 345, 477, 532, 604
BtgI	CCRYGG	1 cut(s)	471
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	553
BveI	ACCTGC	1 cut(s)	594
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	7 cut(s)	56, 120, 395, 416, 458, 475, 602
Csp6I	GTAC	2 cut(s)	354, 451
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	2 cut(s)	206, 437
CviQI	GTAC	2 cut(s)	354, 451
DdeI	CTNAG	2 cut(s)	102, 361
EaeI	YGGCCR	1 cut(s)	291
EagI	CGGCCG	1 cut(s)	291
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	391
Eco147I	AGGCCT	1 cut(s)	532
Eco47I	GGWCC	4 cut(s)	120, 395, 416, 458
Eco52I	CGGCCG	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	5 cut(s)	58, 177, 345, 454, 481
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	209, 440
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	2 cut(s)	205, 436
Fnu4HI	GCNGC	3 cut(s)	240, 549, 656
FokI	GGATG	1 cut(s)	540
Fsp4HI	GCNGC	3 cut(s)	240, 549, 656
FspBI	CTAG	2 cut(s)	263, 336
GluI	GCNGC	3 cut(s)	240, 549, 656
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	6 cut(s)	58, 293, 345, 477, 532, 604
HapII	CCGG	2 cut(s)	398, 503
Hin1II	CATG	2 cut(s)	209, 440
HinfI	GANTC	2 cut(s)	106, 496
HpaII	CCGG	2 cut(s)	398, 503
HphI	GGTGA	3 cut(s)	77, 259, 326
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	3 cut(s)	48, 75, 364
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	4 cut(s)	239, 403, 442, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 305, 483
HpyF3I	CTNAG	2 cut(s)	102, 361
Hsp92II	CATG	2 cut(s)	209, 440
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	251, 535
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	263, 336
MaeIII	GTNAC	1 cut(s)	265
MluCI	AATT	2 cut(s)	80, 520
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	4 cut(s)	56, 280, 370, 615
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	3 cut(s)	215, 242, 647
MspI	CCGG	2 cut(s)	398, 503
MspR9I	CCNGG	6 cut(s)	60, 179, 347, 456, 483, 504
MvaI	CCWGG	5 cut(s)	60, 179, 347, 456, 483
MwoI	GCNNNNNNNGC	3 cut(s)	245, 305, 483
NciI	CCSGG	1 cut(s)	504
NlaIII	CATG	2 cut(s)	209, 440
NlaIV	GGNNCC	2 cut(s)	121, 372
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	106, 496
PinAI	ACCGGT	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	241, 550, 657
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	5 cut(s)	58, 177, 345, 454, 481
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	5 cut(s)	58, 177, 345, 454, 481
PspN4I	GGNNCC	2 cut(s)	121, 372
PspPI	GGNCC	7 cut(s)	56, 120, 395, 416, 458, 475, 602
PspPPI	RGGWCCY	1 cut(s)	416
PvuII	CAGCTG	2 cut(s)	215, 242
RsaI	GTAC	2 cut(s)	355, 452
RsaNI	GTAC	2 cut(s)	354, 451
RseI	CAYNNNNRTG	1 cut(s)	515
SatI	GCNGC	3 cut(s)	240, 549, 656
Sau96I	GGNCC	7 cut(s)	56, 120, 395, 416, 458, 475, 602
ScrFI	CCNGG	6 cut(s)	60, 179, 347, 456, 483, 504
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	4 cut(s)	120, 395, 416, 458
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SpeI	ACTAGT	1 cut(s)	262
Sse9I	AATT	2 cut(s)	80, 520
SseBI	AGGCCT	1 cut(s)	532
SsiI	CCGC	2 cut(s)	434, 647
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	263, 336
StuI	AGGCCT	1 cut(s)	532
StyD4I	CCNGG	6 cut(s)	58, 177, 345, 454, 481, 502
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	80, 520
TfiI	GAWTC	2 cut(s)	106, 496
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	3 cut(s)	239, 548, 655
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	5 cut(s)	33, 194, 204, 509, 533
VpaK11BI	GGWCC	4 cut(s)	120, 395, 416, 458
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 364
XspI	CTAG	2 cut(s)	263, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.