Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003736

Physical Location & Seq

Genomic Coordinates Forward (+)

2435379 .. 2440338

Gene Structure 4960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGCATGGTAGGATGAGTGCAAAGGTCGATACGTCTGCATCAGCAAGTGGTGGCCAAAAGGTCTCCAAGTTTGCTGCTAAGTCTGGATTTGTTATACCGAAAAACAAGTTATCAGGTTCACTCGTGCCCATCTTCCGGGGAGACAAAAATGTTGGAGCCAGTGATCATAGTGGTGGAGAAAGTAAGAAACAGATTCAGAGGAAAACGAAATGGGGTGCTGATCTGACTCAAGATGCTTCTGTTAGAAAGGGAAGAGCATTAGCTTATCAGACTCGGGTGGATCAAATTACACAACAGCTGAAATCTGGAATATCAGAGTTTGGAAACAATGAGAACGTGCCATCACCATCTCAGGATCCAGACCACATATCCTCTACATATCAAGTTGACAAGGAGGGTGCAGAACAATTGGAACTGGAAAAGCGGGAAGCCATAGGTGAAATACTAAAGTTGAATCCAAATTACAAGGCTCCAGCTGATTATAAACCTTTGTTGAAAGAGGCAACAGTTCCTATTCCTGTCAATGAATACCCAACATACAATATTCTTGGTCTGATATATGGGCCTGGAGGTGATAATCAGAAGCAATTAGAGAAGGAAACAGGAGCTAAGATTCAAGTCTATGGTACCAAAGCAGAGACGGGAGAGAAGGCTGAAATAAAACAATATGCTGGGAGTGAAATCCAGGCTGAATATGAAAAGTTATATGTTCATGTATCAGCTGACACATTTGAGAAAGTAGATGCAGCTGTTGCTGTAATCGAACTACTTGTCACCTCTGTATCTGGAAATCTGTCGGCCGTTGCCAAAACAGCTTTGAGTGATAATAATGCTCAAGTTCCTAGTCAAGGCCAGGACAGTACCACCTCAGATATGGTTCCAACTACTATGGTAGACCAAGGACCGGTGCAACCAGCGACAGGACCTACACAAACTCCACCGCATGTGCAGTTTCAGTACCCTGGTCCATTTTTCTCCACAGGCCGACTTGGCAGTCCCATGAATCTTCCGGGCTTCACACCAATGAATTCTCAAAGGCCTATTCTCAACAATGCTGCCCATCCATCAACATCACCTTTCAACTTGACAAACCTGCCGTCATTATTTGGGCCTCCACCAGATCTTTTTCCCCAGACACAGCACCTACCACCAGCGGTTTTGCAGCATACATATATGCCTCAGACCAGTCCTGGTTCTCTTGGTGCACCAAGAAACTTCTCTATGATGACTTCCCAGCCTTCATCAGTTCAAACTAATGTTTCAGCTCCAGTTACATTCTTGGGAAATCGACCACCAACAGGCCAAAGTAATCATCCCCTTGAATCAATACCTGACTGGCAACTGACACCTGCTGGAAGCTCTGCTGGATGGAGCAGACCACCGACATCTGCGGGTTTCAGTAATAATATGCACATGGCACCTAATCCTCTAAATCATCTCAATGCAGCTCCAACTTTTACTGCTGTGCCACAACCTCAAGTTGGCCTTCCTTCTACTTTACCAATGCCAGCACTTGCTCAACCCAAACCATATATGACCCCTATGTCAGGTTCCGCTCCAGCTCCTTCACCGGGCGTAGTTACATCTTTACATCCACCTCAGCCACCAAGAGTCCCTAGTTCTGTTTCGGGAAATGTACCAAATTTCAGTCCTATAAAACCACTGACAACTCCAAGTCCTGGTGATTTCACTTTCCAGCCTCACCGACCGCAAAATCCAGCCTTTCAAACAGTTCCGCAACAAAGCAATCAGTTTTCAGTTCACAATGCTCACCCAGCTGGACCAATGGTGCGACCACAGGTACCATCTTTGCAGTTGCCTGTGCGACATATGACTCCTCAGCCAGGCAATCAGGTGTTATCAAGGCCACAGGTTGGTGACCAGATTAGTCAACCTTCAGCTCATATAAATGCTGTCCAGTTTGCTAGAAATTCAACTGCCATTTCAGTTTCTCCCAGACTTGCAACATTTCCGGACATCAATCCTGTTGCACCTAGAACGTCACTCCTGCCAATGAGACCGGGGAACTTTAATCAAGCTCACCAAATGCCCAATTTGCCCAGTCCTTTGCCTCCAAGGCCAGGAGGTCATATTCAAATTCAGCACAGTTATCCTGCTCAGTTGGCTCCGAATCAACAATTCAACAATCCATTTGCATCTGGTAAGTCGTCTAATCCTGGAGGACACCAACTTTATGATCCATTCTCGCCCACTTCTGACTCAACAGCAAGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 SF1-HH

Protein Analysis

745

Amino Acids

79.64

Weight (kDa)

9.31

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	61 - 162	8.8e-08	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	176 - 258	7e-14	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32940
fragaria_vesca	FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840
malus_domestica	MD03G1008800.v1.1 MD03G1008900.v1.1 MD03G1009300.v1.1 MD03G1009900.v1.1 MD03G1010000.v1.1 MD03G1010200.v1.1
prunus_persica	Prupe.6G010100_v2.0.a1
pyrus_communis	pycom03g00890 pycom03g00910 pycom11g00730 pycom11g00740 pycom11g00780
rosa_chinensis	RchiOBHm_Chr5g0081541
rosa_laevigata	RLG00000036946
rosa_multiflora	Rmu_co8214750.1_g000001 Rmu_co8505191.1_g000001 Rmu_sc0028842.1_g000001 Rmu_sc0038011.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002010
rosa_rugosa	Rorug05G0477200
rosa_samantha	Rh5AG528500 Rh5BG553300 Rh5CG576100 Rh5DG563400
rosa_wichuraiana	Rw5G049170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AarI	CACCTGC	1 cut(s)	1357
AasI	GACNNNNNNGTC	2 cut(s)	993, 1543
Acc36I	ACCTGC	2 cut(s)	1101, 1357
Acc65I	GGTACC	2 cut(s)	626, 1801
AccB1I	GGYRCC	3 cut(s)	626, 1417, 1801
AccB7I	CCANNNNNTGG	2 cut(s)	1679, 1874
AccBSI	CCGCTC	1 cut(s)	1556
AccI	GTMKAC	1 cut(s)	894
AccIII	TCCGGA	1 cut(s)	1972
AciI	CCGC	7 cut(s)	424, 941, 1154, 1391, 1554, 1709, 1736
AclWI	GGATC	4 cut(s)	288, 350, 363, 2192
AcoI	YGGCCR	2 cut(s)	52, 798
AcsI	RAATTY	4 cut(s)	1027, 1642, 1930, 2097
AcuI	CTGAAG	1 cut(s)	1881
AfaI	GTAC	5 cut(s)	628, 862, 959, 1638, 1803
AgeI	ACCGGT	1 cut(s)	904
AjnI	CCWGG	9 cut(s)	565, 684, 852, 961, 1189, 1678, 1843, 2080, 2176
Alw21I	GWGCWC	1 cut(s)	1207
Alw26I	GTCTC	4 cut(s)	67, 135, 632, 2011
Alw44I	GTGCAC	1 cut(s)	1203
AlwI	GGATC	4 cut(s)	288, 350, 363, 2192
Ama87I	CYCGRG	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	1972
ApaLI	GTGCAC	1 cut(s)	1203
ApeKI	GCWGC	5 cut(s)	74, 746, 1055, 1162, 1445
ApoI	RAATTY	4 cut(s)	1027, 1642, 1930, 2097
ArsI	GACNNNNNNTTYG	4 cut(s)	756, 788, 1082, 1114
AsiGI	ACCGGT	1 cut(s)	904
Asp718I	GGTACC	2 cut(s)	626, 1801
AspS9I	GGNCC	6 cut(s)	563, 902, 923, 965, 1109, 1781
AsuC2I	CCSGG	4 cut(s)	137, 1011, 1572, 2022
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	4 cut(s)	902, 923, 965, 1781
BaeGI	GKGCMC	2 cut(s)	129, 1207
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BalI	TGGCCA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	355
BanI	GGYRCC	3 cut(s)	626, 1417, 1801
BauI	CACGAG	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	1207
BbvCI	CCTCAGC	2 cut(s)	1599, 1839
BbvI	GCAGC	5 cut(s)	61, 758, 1042, 1174, 1457
BccI	CCATC	7 cut(s)	137, 349, 355, 1068, 1072, 1362, 1813
BceAI	ACGGC	2 cut(s)	785, 1081
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	9 cut(s)	567, 686, 854, 963, 1191, 1680, 1845, 2082, 2178
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	4 cut(s)	137, 1011, 1572, 2022
BcoDI	GTCTC	4 cut(s)	67, 135, 632, 2011
BfaI	CTAG	4 cut(s)	843, 1617, 1926, 1995
BfuAI	ACCTGC	2 cut(s)	1101, 1357
BglI	GCCNNNNNGGC	2 cut(s)	990, 2077
BglII	AGATCT	1 cut(s)	1120
BisI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
BlsI	GCNGC	5 cut(s)	76, 748, 1057, 1164, 1447
Bme18I	GGWCC	4 cut(s)	902, 923, 965, 1781
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	6 cut(s)	563, 902, 923, 965, 1109, 1781
BmiI	GGNNCC	9 cut(s)	157, 357, 471, 628, 879, 1419, 1552, 1803, 2127
BmrI	ACTGGG	1 cut(s)	2055
BmsI	GCATC	4 cut(s)	47, 223, 733, 2165
BmuI	ACTGGG	1 cut(s)	2055
BpmI	CTGGAG	5 cut(s)	456, 588, 1251, 1542, 2199
Bpu10I	CCTNAGC	2 cut(s)	1599, 1839
BpuEI	CTTGAG	3 cut(s)	213, 819, 1461
BpuMI	CCSGG	4 cut(s)	137, 1011, 1572, 2022
BsaI	GGTCTC	2 cut(s)	67, 2011
BsaJI	CCNNGG	5 cut(s)	136, 898, 961, 2021, 2075
BsaWI	WCCGGW	2 cut(s)	904, 1972
BsaXI	ACNNNNNCTCC	2 cut(s)	919, 949
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	7 cut(s)	159, 420, 1185, 1268, 1340, 1918, 2061
BseAI	TCCGGA	1 cut(s)	1972
BseBI	CCWGG	9 cut(s)	567, 686, 854, 963, 1191, 1680, 1845, 2082, 2178
BseDI	CCNNGG	5 cut(s)	136, 898, 961, 2021, 2075
BseGI	GGATG	5 cut(s)	18, 1060, 1312, 1373, 1591
BseMII	CTCAG	6 cut(s)	365, 882, 1193, 1613, 1853, 2132
BseNI	ACTGG	7 cut(s)	159, 420, 1185, 1268, 1340, 1918, 2061
BseRI	GAGGAG	1 cut(s)	1827
BseSI	GKGCMC	2 cut(s)	129, 1207
BseX3I	CGGCCG	1 cut(s)	798
BseXI	GCAGC	5 cut(s)	61, 758, 1042, 1174, 1457
BseYI	CCCAGC	3 cut(s)	671, 1233, 1774
BsgI	GTGCAG	2 cut(s)	420, 968
Bsh1285I	CGRYCG	2 cut(s)	801, 1709
BshNI	GGYRCC	3 cut(s)	626, 1417, 1801
BshTI	ACCGGT	1 cut(s)	904
BsiEI	CGRYCG	2 cut(s)	801, 1709
BsiHKAI	GWGCWC	1 cut(s)	1207
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	6 cut(s)	136, 905, 1010, 1571, 1973, 2021
BslFI	GGGAC	2 cut(s)	981, 1598
BsmAI	GTCTC	4 cut(s)	67, 135, 632, 2011
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	2 cut(s)	981, 1598
Bso31I	GGTCTC	2 cut(s)	67, 2011
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	129, 1207
Bsp13I	TCCGGA	1 cut(s)	1972
Bsp143I	GATC	6 cut(s)	163, 220, 280, 355, 1120, 2197
BspACI	CCGC	7 cut(s)	424, 941, 1154, 1391, 1554, 1709, 1736
BspCNI	CTCAG	6 cut(s)	364, 881, 1192, 1612, 1852, 2131
BspEI	TCCGGA	1 cut(s)	1972
BspLI	GGNNCC	9 cut(s)	157, 357, 471, 628, 879, 1419, 1552, 1803, 2127
BspMI	ACCTGC	2 cut(s)	1101, 1357
BspPI	GGATC	4 cut(s)	288, 350, 363, 2192
BspQI	GCTCTTC	1 cut(s)	247
BspT107I	GGYRCC	3 cut(s)	626, 1417, 1801
BspTNI	GGTCTC	2 cut(s)	67, 2011
BsrBI	CCGCTC	1 cut(s)	1556
BsrFI	RCCGGY	1 cut(s)	904
BsrI	ACTGG	7 cut(s)	159, 420, 1185, 1268, 1340, 1918, 2061
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	5 cut(s)	136, 898, 961, 2021, 2075
BssMI	GATC	6 cut(s)	163, 220, 280, 355, 1120, 2197
BssSI	CACGAG	1 cut(s)	122
BssT1I	CCWWGG	2 cut(s)	898, 2075
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	9 cut(s)	567, 686, 854, 963, 1191, 1680, 1845, 2082, 2178
Bst4CI	ACNGT	4 cut(s)	508, 860, 1732, 2108
Bst6I	CTCTTC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	1509
BstDEI	CTNAG	8 cut(s)	78, 351, 609, 868, 1179, 1599, 1839, 2118
BstEII	GGTNACC	1 cut(s)	1877
BstENI	CCTNNNNNAGG	3 cut(s)	846, 1545, 1842
BstF5I	GGATG	5 cut(s)	18, 1060, 1312, 1373, 1591
BstKTI	GATC	6 cut(s)	166, 223, 283, 358, 1123, 2200
BstMAI	GTCTC	4 cut(s)	67, 135, 632, 2011
BstMBI	GATC	6 cut(s)	163, 220, 280, 355, 1120, 2197
BstMCI	CGRYCG	2 cut(s)	801, 1709
BstMWI	GCNNNNNNNGC	7 cut(s)	752, 812, 990, 1775, 2056, 2077, 2123
BstNI	CCWGG	9 cut(s)	567, 686, 854, 963, 1191, 1680, 1845, 2082, 2178
BstNSI	RCATGY	1 cut(s)	947
BstPI	GGTNACC	1 cut(s)	1877
BstSLI	GKGCMC	2 cut(s)	129, 1207
BstV1I	GCAGC	5 cut(s)	61, 758, 1042, 1174, 1457
BstX2I	RGATCY	2 cut(s)	355, 1120
BstYI	RGATCY	2 cut(s)	355, 1120
BstZI	CGGCCG	1 cut(s)	798
BtsCI	GGATG	5 cut(s)	18, 1060, 1312, 1373, 1591
BtsIMutI	CAGTG	2 cut(s)	166, 1661
BveI	ACCTGC	2 cut(s)	1101, 1357
Cac8I	GCNNGC	1 cut(s)	1509
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	6 cut(s)	563, 902, 923, 965, 1109, 1781
Csp6I	GTAC	5 cut(s)	627, 861, 958, 1637, 1802
CspAI	ACCGGT	1 cut(s)	904
CviAII	CATG	5 cut(s)	5, 713, 944, 1000, 1414
CviQI	GTAC	5 cut(s)	627, 861, 958, 1637, 1802
DdeI	CTNAG	8 cut(s)	78, 351, 609, 868, 1179, 1599, 1839, 2118
DpnI	GATC	6 cut(s)	165, 222, 282, 357, 1122, 2199
DpnII	GATC	6 cut(s)	163, 220, 280, 355, 1120, 2197
DrdI	GACNNNNNNGTC	2 cut(s)	993, 1543
DseDI	GACNNNNNNGTC	2 cut(s)	993, 1543
EaeI	YGGCCR	2 cut(s)	52, 798
EagI	CGGCCG	1 cut(s)	798
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	798
Eco130I	CCWWGG	2 cut(s)	898, 2075
Eco147I	AGGCCT	1 cut(s)	1039
Eco31I	GGTCTC	2 cut(s)	67, 2011
Eco47I	GGWCC	4 cut(s)	902, 923, 965, 1781
Eco52I	CGGCCG	1 cut(s)	798
Eco57I	CTGAAG	1 cut(s)	1881
Eco88I	CYCGRG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	1877
EcoNI	CCTNNNNNAGG	3 cut(s)	846, 1545, 1842
EcoO109I	RGGNCCY	1 cut(s)	923
EcoO65I	GGTNACC	1 cut(s)	1877
EcoRI	GAATTC	1 cut(s)	1027
EcoRII	CCWGG	9 cut(s)	565, 684, 852, 961, 1189, 1678, 1843, 2080, 2176
EcoT14I	CCWWGG	2 cut(s)	898, 2075
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	898, 2075
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	5 cut(s)	8, 716, 947, 1003, 1417
FalI	AAGNNNNNCTT	2 cut(s)	1470, 1502
FaqI	GGGAC	2 cut(s)	981, 1598
FatI	CATG	5 cut(s)	4, 712, 943, 999, 1413
FauI	CCCGC	2 cut(s)	417, 1384
FauNDI	CATATG	1 cut(s)	1830
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
FokI	GGATG	5 cut(s)	25, 1047, 1299, 1380, 1578
Fsp4HI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
FspBI	CTAG	4 cut(s)	843, 1617, 1926, 1995
GluI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
GsaI	CCCAGC	3 cut(s)	675, 1237, 1778
GsuI	CTGGAG	5 cut(s)	456, 588, 1251, 1542, 2199
HapII	CCGG	6 cut(s)	136, 905, 1010, 1571, 1973, 2021
Hin1II	CATG	5 cut(s)	8, 716, 947, 1003, 1417
HincII	GTYRAC	2 cut(s)	388, 1892
HindII	GTYRAC	2 cut(s)	388, 1892
HpaII	CCGG	6 cut(s)	136, 905, 1010, 1571, 1973, 2021
Hpy166II	GTNNAC	6 cut(s)	119, 388, 895, 1205, 1762, 1892
Hpy188III	TCNNGA	8 cut(s)	84, 230, 306, 353, 359, 786, 1629, 1973
Hpy8I	GTNNAC	6 cut(s)	119, 388, 895, 1205, 1762, 1892
HpyAV	CCTTC	7 cut(s)	589, 643, 1248, 1496, 1500, 1575, 1905
HpyCH4III	ACNGT	4 cut(s)	508, 860, 1732, 2108
HpyCH4IV	ACGT	3 cut(s)	32, 336, 2000
HpyF10VI	GCNNNNNNNGC	7 cut(s)	752, 812, 990, 1775, 2056, 2077, 2123
HpyF3I	CTNAG	8 cut(s)	78, 351, 609, 868, 1179, 1599, 1839, 2118
HpySE526I	ACGT	3 cut(s)	32, 336, 2000
Hsp92II	CATG	5 cut(s)	8, 716, 947, 1003, 1417
Kpn2I	TCCGGA	1 cut(s)	1972
KpnI	GGTACC	2 cut(s)	630, 1805
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	6 cut(s)	163, 220, 280, 355, 1120, 2197
LguI	GCTCTTC	1 cut(s)	247
LmnI	GCTCC	9 cut(s)	155, 475, 605, 1270, 1371, 1453, 1561, 1567, 2131
Lsp1109I	GCAGC	5 cut(s)	61, 758, 1042, 1174, 1457
LweI	GCATC	4 cut(s)	47, 223, 733, 2165
MaeI	CTAG	4 cut(s)	843, 1617, 1926, 1995
MaeII	ACGT	3 cut(s)	32, 336, 2000
MaeIII	GTNAC	5 cut(s)	772, 1270, 1579, 1877, 2001
MalI	GATC	6 cut(s)	165, 222, 282, 357, 1122, 2199
MbiI	CCGCTC	1 cut(s)	1556
MboI	GATC	6 cut(s)	163, 220, 280, 355, 1120, 2197
MboII	GAAGA	3 cut(s)	124, 264, 998
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	2 cut(s)	355, 1120
MhlI	GDGCHC	2 cut(s)	129, 1207
MlsI	TGGCCA	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	5 cut(s)	220, 265, 1620, 1828, 2213
MmeI	TCCRAC	3 cut(s)	133, 905, 1475
Mox20I	TGGCCA	1 cut(s)	54
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	1972
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	1 cut(s)	2031
MslI	CAYNNNNRTG	4 cut(s)	171, 1022, 1440, 1908
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	6 cut(s)	298, 476, 722, 749, 1154, 1778
MspI	CCGG	6 cut(s)	136, 905, 1010, 1571, 1973, 2021
MunI	CAATTG	1 cut(s)	407
MvaI	CCWGG	9 cut(s)	567, 686, 854, 963, 1191, 1680, 1845, 2082, 2178
MwoI	GCNNNNNNNGC	7 cut(s)	752, 812, 990, 1775, 2056, 2077, 2123
NciI	CCSGG	4 cut(s)	137, 1011, 1572, 2022
NdeI	CATATG	1 cut(s)	1830
NdeII	GATC	6 cut(s)	163, 220, 280, 355, 1120, 2197
NlaIII	CATG	5 cut(s)	8, 716, 947, 1003, 1417
NlaIV	GGNNCC	9 cut(s)	157, 357, 471, 628, 879, 1419, 1552, 1803, 2127
NmuCI	GTSAC	3 cut(s)	772, 1877, 2001
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	947
PaqCI	CACCTGC	1 cut(s)	1357
PceI	AGGCCT	1 cut(s)	1039
PciSI	GCTCTTC	1 cut(s)	247
PfeI	GAWTC	6 cut(s)	193, 454, 613, 1003, 1322, 2131
PflMI	CCANNNNNTGG	2 cut(s)	1679, 1874
PfoI	TCCNGGA	1 cut(s)	2176
PinAI	ACCGGT	1 cut(s)	904
PkrI	GCNGC	5 cut(s)	76, 748, 1057, 1164, 1447
PleI	GAGTC	5 cut(s)	220, 265, 1619, 1828, 2213
PpsI	GAGTC	5 cut(s)	220, 265, 1619, 1828, 2213
PpuMI	RGGWCCY	1 cut(s)	923
PsiI	TTATAA	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	923
Psp6I	CCWGG	9 cut(s)	565, 684, 852, 961, 1189, 1678, 1843, 2080, 2176
PspEI	GGTNACC	1 cut(s)	1877
PspFI	CCCAGC	3 cut(s)	671, 1233, 1774
PspGI	CCWGG	9 cut(s)	565, 684, 852, 961, 1189, 1678, 1843, 2080, 2176
PspN4I	GGNNCC	9 cut(s)	157, 357, 471, 628, 879, 1419, 1552, 1803, 2127
PspPI	GGNCC	6 cut(s)	563, 902, 923, 965, 1109, 1781
PspPPI	RGGWCCY	1 cut(s)	923
PsuI	RGATCY	2 cut(s)	355, 1120
PvuII	CAGCTG	5 cut(s)	298, 476, 722, 749, 1778
RsaI	GTAC	5 cut(s)	628, 862, 959, 1638, 1803
RsaNI	GTAC	5 cut(s)	627, 861, 958, 1637, 1802
RseI	CAYNNNNRTG	4 cut(s)	171, 1022, 1440, 1908
SapI	GCTCTTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	2031
SatI	GCNGC	5 cut(s)	75, 747, 1056, 1163, 1446
Sau3AI	GATC	6 cut(s)	163, 220, 280, 355, 1120, 2197
Sau96I	GGNCC	6 cut(s)	563, 902, 923, 965, 1109, 1781
SchI	GAGTC	5 cut(s)	220, 265, 1620, 1828, 2213
SduI	GDGCHC	2 cut(s)	129, 1207
SfaNI	GCATC	4 cut(s)	47, 223, 733, 2165
SinI	GGWCC	4 cut(s)	902, 923, 965, 1781
SmiMI	CAYNNNNRTG	4 cut(s)	171, 1022, 1440, 1908
SmlI	CTYRAG	3 cut(s)	228, 834, 1476
SmoI	CTYRAG	3 cut(s)	228, 834, 1476
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	7 cut(s)	424, 941, 1154, 1391, 1554, 1709, 1736
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	4 cut(s)	843, 1617, 1926, 1995
StuI	AGGCCT	1 cut(s)	1039
StyI	CCWWGG	2 cut(s)	898, 2075
TaaI	ACNGT	4 cut(s)	508, 860, 1732, 2108
TaiI	ACGT	3 cut(s)	35, 339, 2003
TaqI	TCGA	3 cut(s)	27, 762, 1288
TfiI	GAWTC	6 cut(s)	193, 454, 613, 1003, 1322, 2131
Tru1I	TTAA	1 cut(s)	2031
Tru9I	TTAA	1 cut(s)	2031
TscAI	CASTG	2 cut(s)	166, 1668
TseFI	GTSAC	3 cut(s)	772, 1877, 2001
TseI	GCWGC	5 cut(s)	74, 746, 1055, 1162, 1445
Tsp45I	GTSAC	3 cut(s)	772, 1877, 2001
TspDTI	ATGAA	6 cut(s)	540, 701, 711, 1016, 1040, 1230
TspRI	CASTG	2 cut(s)	166, 1668
Van91I	CCANNNNNTGG	2 cut(s)	1679, 1874
VneI	GTGCAC	1 cut(s)	1203
VpaK11BI	GGWCC	4 cut(s)	902, 923, 965, 1781
XagI	CCTNNNNNAGG	3 cut(s)	846, 1545, 1842
XapI	RAATTY	4 cut(s)	1027, 1642, 1930, 2097
XceI	RCATGY	1 cut(s)	947
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XmiI	GTMKAC	1 cut(s)	894
XspI	CTAG	4 cut(s)	843, 1617, 1926, 1995
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.