Rmu_co8505191.1_g000001

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8505191.1
OG0003736
Physical Location & Seq
Forward (+)
1 .. 617
617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8505191.1_g000001.1.cds

Sequence Viewer

Length: 617 bp
tttcgggaaatgtaccaaatttcagtcctataaaaccactgacaactccaagtcctggtgatttcactttccagcctcaccgaccgcaaaatccagcctttcaaacagttccccaacaaagcaatcagttttcagttcacaatgctcacccagctggaccaatggtgcgaccacaggtaccatctttgcagttgcctgtgcgacatatgactcctcagccaggcaatcaggtgttatcaaggccacaggttggtgaccagatgagtcaaccttcagctcatataaatgctgtccagtttgctagaaattcaactgccatttcagttcctcccagacttgcaacatttccggacatcaatcctgttgcacctagaacgtcactcctgccaatgagacaggggaactttaatcaagctcaccaaatgcccaatttgcccagtcctttgcctccaaggccacgaggtcatattcaaattcagcacagttatcctgctcaattggccccaaatcaacagttcatcaacaatccatttgcatctggtaagtcgtctaatcctggaggacaccaactttatgatccattctcgcccacttctgactcaacagcaaggaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

204

Amino Acids

22.27

Weight (kDa)

11.71

Isoelectric Point (pI)

66.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 177
AccB7I CCANNNNNTGG 2 cut(s) 55, 250
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 1 cut(s) 85
AclWI GGATC 1 cut(s) 571
AcsI RAATTY 3 cut(s) 18, 306, 473
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 2 cut(s) 14, 179
AfiI CCNNNNNNNGG 3 cut(s) 55, 220, 250
AgsI TTSAA 3 cut(s) 103, 311, 472
AjnI CCWGG 3 cut(s) 54, 219, 555
AluBI AGCT 3 cut(s) 154, 277, 415
AluI AGCT 3 cut(s) 154, 277, 415
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 1 cut(s) 571
Aor13HI TCCGGA 1 cut(s) 348
AoxI GGCC 3 cut(s) 241, 454, 500
ApoI RAATTY 3 cut(s) 18, 306, 473
Asp718I GGTACC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 157, 501
AsuHPI GGTGA 5 cut(s) 70, 70, 139, 265, 409
AvaII GGWCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 177
BauI CACGAG 1 cut(s) 458
BbvCI CCTCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 189
BciT130I CCWGG 3 cut(s) 56, 221, 557
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 2 cut(s) 302, 371
BglI GCCNNNNNGGC 1 cut(s) 453
Bme1390I CCNGG 3 cut(s) 56, 221, 557
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 157, 501
BmiI GGNNCC 2 cut(s) 179, 503
BmrFI CCNGG 3 cut(s) 56, 221, 557
BmrI ACTGGG 1 cut(s) 431
BmsI GCATC 1 cut(s) 544
BmuI ACTGGG 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 578
Bpu10I CCTNAGC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 451
BsaWI WCCGGW 1 cut(s) 348
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 220, 250
Bse1I ACTGG 2 cut(s) 294, 437
BseAI TCCGGA 1 cut(s) 348
BseBI CCWGG 3 cut(s) 56, 221, 557
BseDI CCNNGG 1 cut(s) 451
BseLI CCNNNNNNNGG 3 cut(s) 55, 220, 250
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 294, 437
BseRI GAGGAG 1 cut(s) 203
BseYI CCCAGC 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 3 cut(s) 243, 456, 502
BshNI GGYRCC 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 85
BsiSI CCGG 1 cut(s) 349
BslI CCNNNNNNNGG 3 cut(s) 55, 220, 250
BsmAI GTCTC 1 cut(s) 387
BsnI GGCC 3 cut(s) 243, 456, 502
Bsp13I TCCGGA 1 cut(s) 348
Bsp143I GATC 1 cut(s) 576
BspACI CCGC 1 cut(s) 85
BspANI GGCC 3 cut(s) 243, 456, 502
BspCNI CTCAG 1 cut(s) 228
BspEI TCCGGA 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 179, 503
BspPI GGATC 1 cut(s) 571
BspT107I GGYRCC 1 cut(s) 177
BsrI ACTGG 2 cut(s) 294, 437
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 1 cut(s) 576
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 451
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 3 cut(s) 56, 221, 557
Bst4CI ACNGT 3 cut(s) 108, 484, 515
BstDEI CTNAG 1 cut(s) 215
BstEII GGTNACC 1 cut(s) 253
BstENI CCTNNNNNAGG 1 cut(s) 218
BstKTI GATC 1 cut(s) 579
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 1 cut(s) 576
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 4 cut(s) 151, 432, 453, 499
BstNI CCWGG 3 cut(s) 56, 221, 557
BstPI GGTNACC 1 cut(s) 253
BstSCI CCNGG 3 cut(s) 54, 219, 555
BsuRI GGCC 3 cut(s) 243, 456, 502
BtsIMutI CAGTG 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 157, 501
Csp6I GTAC 2 cut(s) 13, 178
CviJI RGCY 9 cut(s) 75, 97, 154, 219, 243, 277, 415, 456, 502
CviKI_1 RGCY 9 cut(s) 75, 97, 154, 219, 243, 277, 415, 456, 502
CviQI GTAC 2 cut(s) 13, 178
DdeI CTNAG 1 cut(s) 215
DpnI GATC 1 cut(s) 578
DpnII GATC 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 253
EcoRII CCWGG 3 cut(s) 54, 219, 555
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaiI YATR 7 cut(s) 31, 206, 208, 281, 283, 467, 575
FauNDI CATATG 1 cut(s) 206
FspBI CTAG 2 cut(s) 302, 371
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 578
HaeIII GGCC 3 cut(s) 243, 456, 502
HapII CCGG 1 cut(s) 349
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 3 cut(s) 210, 264, 598
HpaII CCGG 1 cut(s) 349
HphI GGTGA 5 cut(s) 70, 70, 139, 265, 409
Hpy166II GTNNAC 2 cut(s) 138, 268
Hpy188I TCNGA 1 cut(s) 597
Hpy188III TCNNGA 2 cut(s) 5, 349
Hpy8I GTNNAC 2 cut(s) 138, 268
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 3 cut(s) 108, 484, 515
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 4 cut(s) 189, 340, 367, 535
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 432, 453, 499
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 376
Kpn2I TCCGGA 1 cut(s) 348
KpnI GGTACC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 576
LweI GCATC 1 cut(s) 544
MaeI CTAG 2 cut(s) 302, 371
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 2 cut(s) 253, 377
MalI GATC 1 cut(s) 578
MboI GATC 1 cut(s) 576
MfeI CAATTG 1 cut(s) 496
MluCI AATT 5 cut(s) 18, 306, 429, 473, 496
MlyI GAGTC 3 cut(s) 204, 273, 592
MnlI CCTC 7 cut(s) 86, 224, 338, 454, 458, 553, 605
MroI TCCGGA 1 cut(s) 348
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 3 cut(s) 56, 221, 557
MunI CAATTG 1 cut(s) 496
MvaI CCWGG 3 cut(s) 56, 221, 557
MwoI GCNNNNNNNGC 4 cut(s) 151, 432, 453, 499
NdeI CATATG 1 cut(s) 206
NdeII GATC 1 cut(s) 576
NlaIV GGNNCC 2 cut(s) 179, 503
NmuCI GTSAC 2 cut(s) 253, 377
PflMI CCANNNNNTGG 2 cut(s) 55, 250
PfoI TCCNGGA 1 cut(s) 555
PleI GAGTC 3 cut(s) 204, 272, 592
PpsI GAGTC 3 cut(s) 204, 272, 592
Psp6I CCWGG 3 cut(s) 54, 219, 555
PspEI GGTNACC 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 3 cut(s) 54, 219, 555
PspN4I GGNNCC 2 cut(s) 179, 503
PspPI GGNCC 2 cut(s) 157, 501
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 2 cut(s) 14, 179
RsaNI GTAC 2 cut(s) 13, 178
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 407
Sau3AI GATC 1 cut(s) 576
Sau96I GGNCC 2 cut(s) 157, 501
SchI GAGTC 3 cut(s) 204, 273, 592
ScrFI CCNGG 3 cut(s) 56, 221, 557
SfaNI GCATC 1 cut(s) 544
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 5 cut(s) 18, 306, 429, 473, 496
SsiI CCGC 1 cut(s) 85
SspMI CTAG 2 cut(s) 302, 371
StyD4I CCNGG 3 cut(s) 54, 219, 555
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 3 cut(s) 108, 484, 515
TaiI ACGT 1 cut(s) 379
TasI AATT 5 cut(s) 18, 306, 429, 473, 496
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 1 cut(s) 44
TseFI GTSAC 2 cut(s) 253, 377
Tsp45I GTSAC 2 cut(s) 253, 377
TspDTI ATGAA 1 cut(s) 507
TspRI CASTG 1 cut(s) 44
Van91I CCANNNNNTGG 2 cut(s) 55, 250
VpaK11BI GGWCC 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 3 cut(s) 18, 306, 473
XspI CTAG 2 cut(s) 302, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.