Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003736

Physical Location & Seq

Genomic Coordinates Forward (+)

716089 .. 716729

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1009300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGAGTGATACACGGTGAATACAGAAACTTATACGTTCATATATCGGCTGAGACATATGAGAAAGTAGATGCAGCTGTTGCTGTAATTGAACTGCTACTCACCTCTGTATCAGGAAATCTGGCAGCGGTTAGCAGTACAGGTGCTTCAGTTCCTGGTGATCATAATGCTCATGTTCCTAGTCAAGTCCAGGACACTACCACCTCTAATGTGGTAAATCAGGGAAATGGTACAACCACTGGCAGTATCTGCACAAACTCCATTAATGGGCAGTTTCAGTACCCTGGTTCATTTTTCTCGACGGGCCCATCTTTCTGCTCCCATAAATATGCCTGGCTTCACTCCGCTGAATTCTTCGAGACTAATTCATGGGTCAGCATCTATCTGCTTATATCTGCTACTCCTTATGCCAGAAATCCATCTGCCATCTCAGTTCCTCCTGTTCGGGCTAGATTGTCCCTCGCACAACTCTCCCTGTCTTGCCTGTCGGGCAAGGTTCGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 SF1-HH

Protein Analysis

169

Amino Acids

17.87

Weight (kDa)

6.57

Isoelectric Point (pI)

26.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32940
fragaria_vesca	FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840
malus_domestica	MD03G1008800.v1.1 MD03G1008900.v1.1 MD03G1009300.v1.1 MD03G1009900.v1.1 MD03G1010000.v1.1 MD03G1010200.v1.1
prunus_persica	Prupe.6G010100_v2.0.a1
pyrus_communis	pycom03g00890 pycom03g00910 pycom11g00730 pycom11g00740 pycom11g00780
rosa_chinensis	RchiOBHm_Chr5g0081541
rosa_laevigata	RLG00000036946
rosa_multiflora	Rmu_co8214750.1_g000001 Rmu_co8505191.1_g000001 Rmu_sc0028842.1_g000001 Rmu_sc0038011.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002010
rosa_rugosa	Rorug05G0477200
rosa_samantha	Rh5AG528500 Rh5BG553300 Rh5CG576100 Rh5DG563400
rosa_wichuraiana	Rw5G049170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	128, 345
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	3 cut(s)	139, 232, 281
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	4 cut(s)	154, 189, 283, 332
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	47, 353
AlwNI	CAGNNNCTG	2 cut(s)	155, 249
AoxI	GGCC	1 cut(s)	304
ApaI	GGGCCC	1 cut(s)	308
ApeKI	GCWGC	3 cut(s)	74, 125, 501
ApoI	RAATTY	1 cut(s)	350
AseI	ATTAAT	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	304, 305
AsuHPI	GGTGA	3 cut(s)	29, 94, 170
BaeGI	GKGCMC	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BanII	GRGCYC	1 cut(s)	308
BarI	GAAGNNNNNNTAC	2 cut(s)	130, 162
BbvI	GCAGC	3 cut(s)	86, 137, 488
BccI	CCATC	3 cut(s)	316, 427, 434
BciT130I	CCWGG	4 cut(s)	156, 191, 285, 334
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	47, 353
BfaI	CTAG	3 cut(s)	180, 450, 505
BglI	GCCNNNNNGGC	1 cut(s)	489
BisI	GCNGC	3 cut(s)	75, 126, 502
BlsI	GCNGC	3 cut(s)	76, 127, 503
Bme1390I	CCNGG	4 cut(s)	156, 191, 285, 334
BmgT120I	GGNCC	2 cut(s)	304, 305
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	4 cut(s)	156, 191, 285, 334
BmsI	GCATC	2 cut(s)	61, 387
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	4 cut(s)	156, 191, 285, 334
BseDI	CCNNGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	42, 444
BseNI	ACTGG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	86, 137, 488
BsgI	GTGCAG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	47, 353
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	306
Bsp120I	GGGCCC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	2 cut(s)	128, 345
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	2 cut(s)	43, 443
BspLI	GGNNCC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	160
Bst2UI	CCWGG	4 cut(s)	156, 191, 285, 334
Bst4CI	ACNGT	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	80, 249
BstDEI	CTNAG	2 cut(s)	51, 430
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	47, 353
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 249, 489, 498
BstNI	CCWGG	4 cut(s)	156, 191, 285, 334
BstSCI	CCNGG	4 cut(s)	154, 189, 283, 332
BstSLI	GKGCMC	1 cut(s)	308
BstV1I	GCAGC	3 cut(s)	86, 137, 488
BsuRI	GGCC	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	237
CaiI	CAGNNNCTG	2 cut(s)	155, 249
Cfr13I	GGNCC	2 cut(s)	304, 305
Csp6I	GTAC	3 cut(s)	138, 231, 280
CviAII	CATG	2 cut(s)	173, 369
CviJI	RGCY	5 cut(s)	50, 77, 306, 337, 449
CviKI_1	RGCY	5 cut(s)	50, 77, 306, 337, 449
CviQI	GTAC	3 cut(s)	138, 231, 280
DdeI	CTNAG	2 cut(s)	51, 430
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	4 cut(s)	154, 189, 283, 332
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	2 cut(s)	176, 372
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	172, 368
FauNDI	CATATG	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	75, 126, 502
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	3 cut(s)	75, 126, 502
FspBI	CTAG	3 cut(s)	180, 450, 505
GluI	GCNGC	3 cut(s)	75, 126, 502
HaeIII	GGCC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	176, 372
HphI	GGTGA	3 cut(s)	29, 94, 170
Hpy188III	TCNNGA	3 cut(s)	114, 298, 358
Hpy99I	CGWCG	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	74, 252
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 249, 489, 498
HpyF3I	CTNAG	2 cut(s)	51, 430
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	176, 372
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	3 cut(s)	86, 137, 488
LweI	GCATC	2 cut(s)	61, 387
MaeI	CTAG	3 cut(s)	180, 450, 505
MaeII	ACGT	1 cut(s)	36
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	3 cut(s)	87, 350, 364
MnlI	CCTC	4 cut(s)	115, 214, 447, 470
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	3 cut(s)	77, 128, 347
MspR9I	CCNGG	4 cut(s)	156, 191, 285, 334
MvaI	CCWGG	4 cut(s)	156, 191, 285, 334
MwoI	GCNNNNNNNGC	4 cut(s)	80, 249, 489, 498
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	176, 372
NlaIV	GGNNCC	1 cut(s)	306
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	76, 127, 503
PshBI	ATTAAT	1 cut(s)	264
Psp6I	CCWGG	4 cut(s)	154, 189, 283, 332
PspGI	CCWGG	4 cut(s)	154, 189, 283, 332
PspN4I	GGNNCC	1 cut(s)	306
PspOMI	GGGCCC	1 cut(s)	304
PspPI	GGNCC	2 cut(s)	304, 305
PstNI	CAGNNNCTG	2 cut(s)	155, 249
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	3 cut(s)	139, 232, 281
RsaNI	GTAC	3 cut(s)	138, 231, 280
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	75, 126, 502
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	2 cut(s)	304, 305
ScrFI	CCNGG	4 cut(s)	156, 191, 285, 334
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	6 cut(s)	39, 79, 107, 145, 206, 498
SfaNI	GCATC	2 cut(s)	61, 387
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	87, 350, 364
SsiI	CCGC	2 cut(s)	128, 345
SspMI	CTAG	3 cut(s)	180, 450, 505
StyD4I	CCNGG	4 cut(s)	154, 189, 283, 332
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	299, 357
TasI	AATT	3 cut(s)	87, 350, 364
TatI	WGTACW	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	3 cut(s)	74, 125, 501
TspDTI	ATGAA	3 cut(s)	29, 279, 357
TspRI	CASTG	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XspI	CTAG	3 cut(s)	180, 450, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.